Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12407 | 3' | -57.8 | NC_003324.1 | + | 47122 | 0.66 | 0.606229 |
Target: 5'- -aGGcaaaCGAGAGGCAacCGCCUCaauCGACGa -3' miRNA: 3'- uaCCca--GCUCUUCGU--GCGGAG---GCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 25822 | 0.66 | 0.583631 |
Target: 5'- -aGGGUUcgcggcgcaccgaGAGAAGUucACGCCgUCuCGACGa -3' miRNA: 3'- uaCCCAG-------------CUCUUCG--UGCGG-AG-GCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 16751 | 0.66 | 0.573995 |
Target: 5'- --aGG-CG-GAuGCAUGCCUCCGACu -3' miRNA: 3'- uacCCaGCuCUuCGUGCGGAGGCUGc -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 25793 | 0.66 | 0.572926 |
Target: 5'- uUGGcgguaccgucauaGUCGAGAcGCACGCCUgCG-CGc -3' miRNA: 3'- uACC-------------CAGCUCUuCGUGCGGAgGCuGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 54494 | 0.66 | 0.562268 |
Target: 5'- aAUGGGU-GAGggGCAUccgcgaaGCCUgcagcgcgaCCGGCGu -3' miRNA: 3'- -UACCCAgCUCuuCGUG-------CGGA---------GGCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 7551 | 0.67 | 0.531692 |
Target: 5'- -aGGGccagCaAGgcGCACGCCUCCGGa- -3' miRNA: 3'- uaCCCa---GcUCuuCGUGCGGAGGCUgc -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 30922 | 0.67 | 0.531692 |
Target: 5'- -cGGGcggCGAGAAGUuccucgaaGCgUCCGACGc -3' miRNA: 3'- uaCCCa--GCUCUUCGug------CGgAGGCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 25519 | 0.67 | 0.531692 |
Target: 5'- aGUGGGUCGGcuGggGCggccugcgcaACGCCUUCuacccgagGACGg -3' miRNA: 3'- -UACCCAGCU--CuuCG----------UGCGGAGG--------CUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 37291 | 0.67 | 0.521285 |
Target: 5'- cUGGGUaaucggcacaGAGAAGCGCaGCCguaCCGAUu -3' miRNA: 3'- uACCCAg---------CUCUUCGUG-CGGa--GGCUGc -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 57036 | 0.68 | 0.480515 |
Target: 5'- cUGGGgagcggcggCGAGGGcGCggAUGCCUUCGACGa -3' miRNA: 3'- uACCCa--------GCUCUU-CG--UGCGGAGGCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 52208 | 0.68 | 0.470564 |
Target: 5'- ---cGUCGGGGAGCuCGCCUUCGcCGa -3' miRNA: 3'- uaccCAGCUCUUCGuGCGGAGGCuGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 19580 | 0.69 | 0.404082 |
Target: 5'- -cGcGG-CaAGAAGCACGCCgacgCCGACGc -3' miRNA: 3'- uaC-CCaGcUCUUCGUGCGGa---GGCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 43451 | 0.71 | 0.320088 |
Target: 5'- uUGGGUCGAGccGCaaGCGCUUCCuGCu -3' miRNA: 3'- uACCCAGCUCuuCG--UGCGGAGGcUGc -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 40715 | 0.71 | 0.290353 |
Target: 5'- aGUGGuGUUGAGGAGgAuCGCCcugaUCCGGCGg -3' miRNA: 3'- -UACC-CAGCUCUUCgU-GCGG----AGGCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 38721 | 0.72 | 0.26883 |
Target: 5'- -cGGGUCGAGAcauaccaGGCGCGCUuggccucugaaaUCgGGCGg -3' miRNA: 3'- uaCCCAGCUCU-------UCGUGCGG------------AGgCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 33957 | 0.77 | 0.121898 |
Target: 5'- cAUGGGUCGGGAuuaAGCAC-CCgcCCGACGg -3' miRNA: 3'- -UACCCAGCUCU---UCGUGcGGa-GGCUGC- -5' |
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12407 | 3' | -57.8 | NC_003324.1 | + | 1307 | 1.06 | 0.000958 |
Target: 5'- cAUGGGUCGAGAAGCACGCCUCCGACGu -3' miRNA: 3'- -UACCCAGCUCUUCGUGCGGAGGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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