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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12407 | 5' | -50.4 | NC_003324.1 | + | 1344 | 1.06 | 0.005168 |
Target: 5'- cCUCGUGAACGAUGUGUUCCCCAUCAUc -3' miRNA: 3'- -GAGCACUUGCUACACAAGGGGUAGUA- -5' |
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12407 | 5' | -50.4 | NC_003324.1 | + | 1935 | 0.69 | 0.829825 |
Target: 5'- -cCGUGAGCGAgcggagaacUGUGaucgUCUCCAUCGc -3' miRNA: 3'- gaGCACUUGCU---------ACACa---AGGGGUAGUa -5' |
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12407 | 5' | -50.4 | NC_003324.1 | + | 35914 | 0.67 | 0.903819 |
Target: 5'- uUCGUGcgGACGAUGcGUUCucgggcagCCCGUCGUu -3' miRNA: 3'- gAGCAC--UUGCUACaCAAG--------GGGUAGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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