Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12411 | 5' | -56.6 | NC_003324.1 | + | 57033 | 0.66 | 0.657476 |
Target: 5'- gGGAgCGGCGgCGaGGGcGCGGAugCc -3' miRNA: 3'- -CCUaGCCGCaGUaCCCuCGCCUugGc -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 9688 | 0.68 | 0.56548 |
Target: 5'- cGGAUacgcccaggucuacaCGGgGUCGUGGGAuGgGGaAACCa -3' miRNA: 3'- -CCUA---------------GCCgCAGUACCCU-CgCC-UUGGc -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 56653 | 0.69 | 0.529871 |
Target: 5'- cGAUagCGGCGUUAUGGGcGGCGGcAUgGg -3' miRNA: 3'- cCUA--GCCGCAGUACCC-UCGCCuUGgC- -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 20266 | 0.69 | 0.489088 |
Target: 5'- ---cCGGCGUCAUacGGGcucAGCGGGccACCGc -3' miRNA: 3'- ccuaGCCGCAGUA--CCC---UCGCCU--UGGC- -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 41350 | 0.7 | 0.459489 |
Target: 5'- -aAUCGGCG-C-UGGGGGCGGcuuaaugaaguAGCCGg -3' miRNA: 3'- ccUAGCCGCaGuACCCUCGCC-----------UUGGC- -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 8018 | 0.71 | 0.41238 |
Target: 5'- cGGAUUGaGCGUCuuguUGGcaguGAGCGG-GCCGg -3' miRNA: 3'- -CCUAGC-CGCAGu---ACC----CUCGCCuUGGC- -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 20562 | 0.73 | 0.31239 |
Target: 5'- cGGAUCGG-GUCucuuguucUGGcGAGCGGGAuCCGg -3' miRNA: 3'- -CCUAGCCgCAGu-------ACC-CUCGCCUU-GGC- -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 34169 | 0.73 | 0.29045 |
Target: 5'- cGAcUCGGUcUCAUGGacaGGGCGGAGCCGc -3' miRNA: 3'- cCU-AGCCGcAGUACC---CUCGCCUUGGC- -5' |
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12411 | 5' | -56.6 | NC_003324.1 | + | 3522 | 1.11 | 0.000644 |
Target: 5'- uGGAUCGGCGUCAUGGGAGCGGAACCGg -3' miRNA: 3'- -CCUAGCCGCAGUACCCUCGCCUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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