miRNA: 3'- gCUaCUaUGAAAGACGua-GGUCGcGG- -5'
miRNA: 3'- gCUaCUAUGaaaGaCGUAGGUCGCGG- -5'
miRNA: 3'- -GCUACUAUGAAAGACGUAGGUCGCGG- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12412 | 3' | -49.1 | NC_003324.1 | + | 7909 | 0.66 | 0.965942 |
|
Target: 5'- gGAgGAaACUUUCUGUucgCCGGC-CCg -3' miRNA: 3'- gCUaCUaUGAAAGACGua-GGUCGcGG- -5' |
|||||||
| 12412 | 3' | -49.1 | NC_003324.1 | + | 4558 | 0.71 | 0.787451 |
|
Target: 5'- aGAgGAUGUgagCcGCAUCCGGCGCCu -3' miRNA: 3'- gCUaCUAUGaaaGaCGUAGGUCGCGG- -5' |
|||||||
| 12412 | 3' | -49.1 | NC_003324.1 | + | 4098 | 1.14 | 0.002269 |
|
Target: 5'- cCGAUGAUACUUUCUGCAUCCAGCGCCu -3' miRNA: 3'- -GCUACUAUGAAAGACGUAGGUCGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home