miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12412 5' -54.4 NC_003324.1 + 49866 0.67 0.719712
Target:  5'- -gGAGUaCGGcaaguGAGCCGGCGggcaaagaucGCugCGUCg -3'
miRNA:   3'- agCUUA-GCC-----UUCGGCCGC----------UGugGUAG- -5'
12412 5' -54.4 NC_003324.1 + 49088 0.67 0.713291
Target:  5'- cCGAAagCGGcgucuauuucgcuGCCGGUGACGCgAUCg -3'
miRNA:   3'- aGCUUa-GCCuu-----------CGGCCGCUGUGgUAG- -5'
12412 5' -54.4 NC_003324.1 + 26454 0.67 0.708994
Target:  5'- aUCGA--CGGcaauGUCGGCGACAUCAa- -3'
miRNA:   3'- -AGCUuaGCCuu--CGGCCGCUGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 16140 0.67 0.708994
Target:  5'- uUCGGuagCGGggGCCGcGCcaggcaucgcuGGCACCGa- -3'
miRNA:   3'- -AGCUua-GCCuuCGGC-CG-----------CUGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 49580 0.68 0.676433
Target:  5'- aCGGcaccGUCGuuGAGGCUgaccagaccuauGGCGAUACCGUCa -3'
miRNA:   3'- aGCU----UAGC--CUUCGG------------CCGCUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 47105 0.68 0.676433
Target:  5'- gCGAGgugCGGcAAGuCUGGCGACugCAc- -3'
miRNA:   3'- aGCUUa--GCC-UUC-GGCCGCUGugGUag -5'
12412 5' -54.4 NC_003324.1 + 18002 0.68 0.66548
Target:  5'- gUCGAucgcuUCGGAuaccgauuGGCCGGCGccacGgGCCAUg -3'
miRNA:   3'- -AGCUu----AGCCU--------UCGGCCGC----UgUGGUAg -5'
12412 5' -54.4 NC_003324.1 + 36707 0.68 0.658893
Target:  5'- uUCGAugaugCGGAugcgcuggcgcugguAGCCaGUGACAUCAUCc -3'
miRNA:   3'- -AGCUua---GCCU---------------UCGGcCGCUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 23770 0.68 0.654496
Target:  5'- gUCGAcAUCGauguGAAGcCCGGCG-CGCCGUg -3'
miRNA:   3'- -AGCU-UAGC----CUUC-GGCCGCuGUGGUAg -5'
12412 5' -54.4 NC_003324.1 + 32436 0.68 0.643491
Target:  5'- cCGGcuacaGGAAGCCgGGCGAUGCCGc- -3'
miRNA:   3'- aGCUuag--CCUUCGG-CCGCUGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 17692 0.68 0.629172
Target:  5'- aUUGGAUCGucgucaucgccgaaGAucaGGCUGGCGAUACCcAUCa -3'
miRNA:   3'- -AGCUUAGC--------------CU---UCGGCCGCUGUGG-UAG- -5'
12412 5' -54.4 NC_003324.1 + 39660 0.69 0.621461
Target:  5'- aCGAucCGGAGGCUGGUgcugacguGGCGCCAg- -3'
miRNA:   3'- aGCUuaGCCUUCGGCCG--------CUGUGGUag -5'
12412 5' -54.4 NC_003324.1 + 39824 0.69 0.599468
Target:  5'- cCGAAUCGaacGAauAGCCGGUGGCACg--- -3'
miRNA:   3'- aGCUUAGC---CU--UCGGCCGCUGUGguag -5'
12412 5' -54.4 NC_003324.1 + 22461 0.69 0.599468
Target:  5'- aCGGAUUGGGAGCUGu---CGCCGUCg -3'
miRNA:   3'- aGCUUAGCCUUCGGCcgcuGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 20800 0.69 0.588509
Target:  5'- gCGAGgcggCGGAccguGuuGGUGACGCgCAUCg -3'
miRNA:   3'- aGCUUa---GCCUu---CggCCGCUGUG-GUAG- -5'
12412 5' -54.4 NC_003324.1 + 14487 0.69 0.577587
Target:  5'- cCGucgCGGAAGCCGGUGcaGCCAa- -3'
miRNA:   3'- aGCuuaGCCUUCGGCCGCugUGGUag -5'
12412 5' -54.4 NC_003324.1 + 26118 0.7 0.56671
Target:  5'- -aGAGcgcCGGcAGaCCGGUGACGCCAUUg -3'
miRNA:   3'- agCUUa--GCCuUC-GGCCGCUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 33774 0.7 0.545122
Target:  5'- -aGGAUUGGAAGCCuGUGAUGCCu-- -3'
miRNA:   3'- agCUUAGCCUUCGGcCGCUGUGGuag -5'
12412 5' -54.4 NC_003324.1 + 20583 0.7 0.534427
Target:  5'- gCGAG-CGGGAuCCGGUgcuguGGCGCCGUCg -3'
miRNA:   3'- aGCUUaGCCUUcGGCCG-----CUGUGGUAG- -5'
12412 5' -54.4 NC_003324.1 + 27081 0.7 0.523806
Target:  5'- cUCGAGUCGuGGgcagAGaCCGGCGGCAacacccUCAUCg -3'
miRNA:   3'- -AGCUUAGC-CU----UC-GGCCGCUGU------GGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.