miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12414 3' -57.5 NC_003324.1 + 4492 1.08 0.000736
Target:  5'- uCACAUCCUCUACGGCGGCGACGCGACu -3'
miRNA:   3'- -GUGUAGGAGAUGCCGCCGCUGCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 22947 0.8 0.08184
Target:  5'- cCGCGUCCagUCUcCGGUGGCGAUGCGAg -3'
miRNA:   3'- -GUGUAGG--AGAuGCCGCCGCUGCGCUg -5'
12414 3' -57.5 NC_003324.1 + 21949 0.73 0.253806
Target:  5'- uGCGggCCUCU-CGuCGGCGGCGCGAUg -3'
miRNA:   3'- gUGUa-GGAGAuGCcGCCGCUGCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 54015 0.72 0.294692
Target:  5'- gGCGUCuUUCUGCaGGCGGCGAaGCGcACu -3'
miRNA:   3'- gUGUAG-GAGAUG-CCGCCGCUgCGC-UG- -5'
12414 3' -57.5 NC_003324.1 + 36262 0.7 0.382513
Target:  5'- aACAUCaguaugCUGCagcaGGuCGGCGGCGUGACg -3'
miRNA:   3'- gUGUAGga----GAUG----CC-GCCGCUGCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 49518 0.69 0.446785
Target:  5'- gGCAcUCUCggccguauCGaGCGGCGAgGCGACg -3'
miRNA:   3'- gUGUaGGAGau------GC-CGCCGCUgCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 19179 0.69 0.45645
Target:  5'- aGCgGUCCUCUGC-GCGGCGcuGgGCGAUc -3'
miRNA:   3'- gUG-UAGGAGAUGcCGCCGC--UgCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 13166 0.69 0.45645
Target:  5'- uGCGUCg---GCGGCGGuCGGCgGCGGCg -3'
miRNA:   3'- gUGUAGgagaUGCCGCC-GCUG-CGCUG- -5'
12414 3' -57.5 NC_003324.1 + 51912 0.68 0.476111
Target:  5'- aACAUCgacgagaUCgagAUGGUGGCGGCGUGAg -3'
miRNA:   3'- gUGUAGg------AGa--UGCCGCCGCUGCGCUg -5'
12414 3' -57.5 NC_003324.1 + 31263 0.68 0.476111
Target:  5'- gCGCGU-UUUUGCGGCGGCGACGg--- -3'
miRNA:   3'- -GUGUAgGAGAUGCCGCCGCUGCgcug -5'
12414 3' -57.5 NC_003324.1 + 41638 0.68 0.486099
Target:  5'- cCACGgcucgCCcgcUCU-CGuCGGCGGCGCGACg -3'
miRNA:   3'- -GUGUa----GG---AGAuGCcGCCGCUGCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 49042 0.68 0.496184
Target:  5'- ----aCCUCUcccGCGGCGGCGGgGCa-- -3'
miRNA:   3'- guguaGGAGA---UGCCGCCGCUgCGcug -5'
12414 3' -57.5 NC_003324.1 + 29988 0.67 0.537407
Target:  5'- cCGCAUCgaUCc-CGGCcggugcacucuGGCGACGCGAUg -3'
miRNA:   3'- -GUGUAGg-AGauGCCG-----------CCGCUGCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 42003 0.67 0.537407
Target:  5'- aCGCGguaCCUCcgGauGCGGCGACuGCGAUc -3'
miRNA:   3'- -GUGUa--GGAGa-UgcCGCCGCUG-CGCUG- -5'
12414 3' -57.5 NC_003324.1 + 21381 0.67 0.547904
Target:  5'- aUAUcgCCggcgaGGCGGCGAaCGCGGCc -3'
miRNA:   3'- -GUGuaGGagaugCCGCCGCU-GCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 42211 0.67 0.547904
Target:  5'- gCugAUCC-CcGCGGCGGCauugGCGACg -3'
miRNA:   3'- -GugUAGGaGaUGCCGCCGcug-CGCUG- -5'
12414 3' -57.5 NC_003324.1 + 42584 0.67 0.558465
Target:  5'- gGCAgCCUCgcuguaGGCcGUGACGCGAUa -3'
miRNA:   3'- gUGUaGGAGaug---CCGcCGCUGCGCUG- -5'
12414 3' -57.5 NC_003324.1 + 32303 0.66 0.579748
Target:  5'- aACggCCUCUGC-GCGGCGcCGCa-- -3'
miRNA:   3'- gUGuaGGAGAUGcCGCCGCuGCGcug -5'
12414 3' -57.5 NC_003324.1 + 35459 0.66 0.590456
Target:  5'- uCACGUCggCgauguCGGCGaGCGugGgGACg -3'
miRNA:   3'- -GUGUAGgaGau---GCCGC-CGCugCgCUG- -5'
12414 3' -57.5 NC_003324.1 + 17713 0.66 0.620592
Target:  5'- gAUAUCCUCgggcccgagcuCGGCGGCaucgugcucaacGGCGCGcCg -3'
miRNA:   3'- gUGUAGGAGau---------GCCGCCG------------CUGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.