miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12414 5' -52.3 NC_003324.1 + 42401 0.67 0.83479
Target:  5'- uGGUCGcggguccgcaacaGCGCCagcGCCaGACAGGAagcGAGCa -3'
miRNA:   3'- gCUAGC-------------UGCGG---UGG-CUGUUCUa--CUCG- -5'
12414 5' -52.3 NC_003324.1 + 53493 0.67 0.826641
Target:  5'- ---cCGAgGCCgaauGCCGGCGAugcccuGAUGAGCu -3'
miRNA:   3'- gcuaGCUgCGG----UGGCUGUU------CUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 593 0.67 0.826641
Target:  5'- uGGUCGA-GCUGCCGACcuuGGUGAucGCc -3'
miRNA:   3'- gCUAGCUgCGGUGGCUGuu-CUACU--CG- -5'
12414 5' -52.3 NC_003324.1 + 6820 0.67 0.825724
Target:  5'- gGAUCGGCGCCguuggccaccuuuACCGAuguCGGGAgaaagGAGa -3'
miRNA:   3'- gCUAGCUGCGG-------------UGGCU---GUUCUa----CUCg -5'
12414 5' -52.3 NC_003324.1 + 38478 0.68 0.807939
Target:  5'- uGAUCGACGagGCCGACcgccuGGUGAa- -3'
miRNA:   3'- gCUAGCUGCggUGGCUGuu---CUACUcg -5'
12414 5' -52.3 NC_003324.1 + 44083 0.68 0.807939
Target:  5'- uGAUccCGGCGgCAgCCGAgGAGGaaUGAGCg -3'
miRNA:   3'- gCUA--GCUGCgGU-GGCUgUUCU--ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 49125 0.68 0.798303
Target:  5'- gGAUUGcccCGCCGCCGcgggaGAGGUGAGa -3'
miRNA:   3'- gCUAGCu--GCGGUGGCug---UUCUACUCg -5'
12414 5' -52.3 NC_003324.1 + 35166 0.68 0.798303
Target:  5'- aGAU-GAUGCCACCGG--AGAUacGGGCg -3'
miRNA:   3'- gCUAgCUGCGGUGGCUguUCUA--CUCG- -5'
12414 5' -52.3 NC_003324.1 + 4575 0.68 0.798303
Target:  5'- -aGUCGcguCGCCGCCGuAgAGGAugUGAGCc -3'
miRNA:   3'- gcUAGCu--GCGGUGGC-UgUUCU--ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 49184 0.68 0.798303
Target:  5'- gCGAUCG-CGUCACCGGCAGcGAaauaGAcGCc -3'
miRNA:   3'- -GCUAGCuGCGGUGGCUGUU-CUa---CU-CG- -5'
12414 5' -52.3 NC_003324.1 + 5047 0.68 0.798303
Target:  5'- uCGAUCGACaCCGCCGcCAAGGacccGAacGCg -3'
miRNA:   3'- -GCUAGCUGcGGUGGCuGUUCUa---CU--CG- -5'
12414 5' -52.3 NC_003324.1 + 48619 0.68 0.79733
Target:  5'- aGGUCGGCGCCcgcauccggcuccGCCGcaACAucaucGGcAUGAGCc -3'
miRNA:   3'- gCUAGCUGCGG-------------UGGC--UGU-----UC-UACUCG- -5'
12414 5' -52.3 NC_003324.1 + 30140 0.68 0.788491
Target:  5'- cCGGU-GuCGCgACCGGCGgcguGAUGGGCg -3'
miRNA:   3'- -GCUAgCuGCGgUGGCUGUu---CUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 49112 0.68 0.788491
Target:  5'- cCGGU-GACGCgAUCGcCAAGAUG-GCg -3'
miRNA:   3'- -GCUAgCUGCGgUGGCuGUUCUACuCG- -5'
12414 5' -52.3 NC_003324.1 + 17396 0.68 0.785515
Target:  5'- uCGAUCGGuggugaccagguccUGCCAuCCGAUGcaGUGAGCg -3'
miRNA:   3'- -GCUAGCU--------------GCGGU-GGCUGUucUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 48436 0.68 0.778515
Target:  5'- -cAUCGaagaGCGCCgcGCCGAgAAGAUGGuGCg -3'
miRNA:   3'- gcUAGC----UGCGG--UGGCUgUUCUACU-CG- -5'
12414 5' -52.3 NC_003324.1 + 29453 0.68 0.778515
Target:  5'- -cGUUGuCGUCACCGACGAGGgcaAGCc -3'
miRNA:   3'- gcUAGCuGCGGUGGCUGUUCUac-UCG- -5'
12414 5' -52.3 NC_003324.1 + 25131 0.68 0.778515
Target:  5'- uGG-CGAUGCCGCCGgugACGcGAUcGAGCu -3'
miRNA:   3'- gCUaGCUGCGGUGGC---UGUuCUA-CUCG- -5'
12414 5' -52.3 NC_003324.1 + 23505 0.69 0.768384
Target:  5'- uGGUCaaccagGGCGCCACCGcgcggccaACGAGAaagccGAGCg -3'
miRNA:   3'- gCUAG------CUGCGGUGGC--------UGUUCUa----CUCG- -5'
12414 5' -52.3 NC_003324.1 + 19594 0.69 0.768384
Target:  5'- uGAUgGACGCCuucCgCGGCAAGA--AGCa -3'
miRNA:   3'- gCUAgCUGCGGu--G-GCUGUUCUacUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.