Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12416 | 3' | -54.6 | NC_003324.1 | + | 14608 | 0.76 | 0.276028 |
Target: 5'- aGGCggUAGCGUgGCGGCCGG---AGCu -3' miRNA: 3'- -CCGuuGUUGCAaCGCCGGCCagcUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 20609 | 0.76 | 0.255808 |
Target: 5'- cGGCgcugAugGGCGcUUGCGGUCGG-CGGGCa -3' miRNA: 3'- -CCG----UugUUGC-AACGCCGGCCaGCUCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 27065 | 0.77 | 0.236818 |
Target: 5'- cGCGGCGuuacCGUUGUGGCCGGUgCG-GCu -3' miRNA: 3'- cCGUUGUu---GCAACGCCGGCCA-GCuCG- -5' |
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12416 | 3' | -54.6 | NC_003324.1 | + | 4852 | 1.13 | 0.000688 |
Target: 5'- cGGCAACAACGUUGCGGCCGGUCGAGCc -3' miRNA: 3'- -CCGUUGUUGCAACGCCGGCCAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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