miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 3' -54.6 NC_003324.1 + 18681 0.67 0.707702
Target:  5'- uGGaugaAGCGcuuGCG-UGCGGaaaGGUCGGGCa -3'
miRNA:   3'- -CCg---UUGU---UGCaACGCCgg-CCAGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 31027 0.67 0.696985
Target:  5'- uGGUAGCGAC----CGGCgCGGUCG-GCg -3'
miRNA:   3'- -CCGUUGUUGcaacGCCG-GCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 4697 0.67 0.718346
Target:  5'- cGCAACAACGaccaggGCGGCUGGcUgGAa- -3'
miRNA:   3'- cCGUUGUUGCaa----CGCCGGCC-AgCUcg -5'
12416 3' -54.6 NC_003324.1 + 19488 0.67 0.696985
Target:  5'- gGGCGAUAGCGUcgGCG-UCGG-CGuGCu -3'
miRNA:   3'- -CCGUUGUUGCAa-CGCcGGCCaGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 53291 0.67 0.728906
Target:  5'- cGCAGCuuuCGUUGUGaaGCCGGcCGccAGCu -3'
miRNA:   3'- cCGUUGuu-GCAACGC--CGGCCaGC--UCG- -5'
12416 3' -54.6 NC_003324.1 + 48454 0.67 0.728906
Target:  5'- aGGCGccaaggGCAAC--UGCGaGCCGGcuuggagugCGAGCa -3'
miRNA:   3'- -CCGU------UGUUGcaACGC-CGGCCa--------GCUCG- -5'
12416 3' -54.6 NC_003324.1 + 25533 0.67 0.749729
Target:  5'- uGGCGGCGACGUUGCc-CCGGaauuUCGccuucuGGCc -3'
miRNA:   3'- -CCGUUGUUGCAACGccGGCC----AGC------UCG- -5'
12416 3' -54.6 NC_003324.1 + 55150 0.67 0.748698
Target:  5'- cGGCAACGGCuacaucugGCugacacaGGCCGGaUGGGCu -3'
miRNA:   3'- -CCGUUGUUGcaa-----CG-------CCGGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 19003 0.67 0.739371
Target:  5'- cGGCGGCuGCac-GCGGCUGGccUCGAacGCg -3'
miRNA:   3'- -CCGUUGuUGcaaCGCCGGCC--AGCU--CG- -5'
12416 3' -54.6 NC_003324.1 + 40496 0.67 0.725748
Target:  5'- aGGCGACGACGaagcGCcagacgaaggcgaaGGCCGGU-GAGg -3'
miRNA:   3'- -CCGUUGUUGCaa--CG--------------CCGGCCAgCUCg -5'
12416 3' -54.6 NC_003324.1 + 39953 0.67 0.728906
Target:  5'- cGGCAAgGAa---GCGGCCgacaagaaGGUCGAGg -3'
miRNA:   3'- -CCGUUgUUgcaaCGCCGG--------CCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 1276 0.67 0.749729
Target:  5'- --uGACGACGUUcggaucGCGGCCGGauuUC-AGCg -3'
miRNA:   3'- ccgUUGUUGCAA------CGCCGGCC---AGcUCG- -5'
12416 3' -54.6 NC_003324.1 + 13170 0.67 0.749729
Target:  5'- aGGCu---GCGUcgGCGG-CGGUCG-GCg -3'
miRNA:   3'- -CCGuuguUGCAa-CGCCgGCCAGCuCG- -5'
12416 3' -54.6 NC_003324.1 + 35480 0.66 0.759969
Target:  5'- gGGCGAgGAaaccaugcGCGGgCGGcCGAGCa -3'
miRNA:   3'- -CCGUUgUUgcaa----CGCCgGCCaGCUCG- -5'
12416 3' -54.6 NC_003324.1 + 3159 0.66 0.799528
Target:  5'- uGGCAAgAGCGggagcgccgUGCGGCCa-UUGAGa -3'
miRNA:   3'- -CCGUUgUUGCa--------ACGCCGGccAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 45217 0.66 0.799528
Target:  5'- aGGCA-CAuCGUUGUugauacgccGGCagCGGUCGAGa -3'
miRNA:   3'- -CCGUuGUuGCAACG---------CCG--GCCAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 29549 0.66 0.798569
Target:  5'- cGCGcccGCAGCcagGCGGCCGugucaucGUCGAGg -3'
miRNA:   3'- cCGU---UGUUGcaaCGCCGGC-------CAGCUCg -5'
12416 3' -54.6 NC_003324.1 + 30614 0.66 0.75691
Target:  5'- cGCGucGCAGCGgcaGCGGCagcgaaggucgccaCGGUCGcaGGCg -3'
miRNA:   3'- cCGU--UGUUGCaa-CGCCG--------------GCCAGC--UCG- -5'
12416 3' -54.6 NC_003324.1 + 54345 0.66 0.77008
Target:  5'- cGGCu-CGGCGcUGauGCCGGUCcauGGCa -3'
miRNA:   3'- -CCGuuGUUGCaACgcCGGCCAGc--UCG- -5'
12416 3' -54.6 NC_003324.1 + 22611 0.66 0.769075
Target:  5'- cGGCAAUAACGUcGUGuuccucaCCGGUaccccguUGAGCa -3'
miRNA:   3'- -CCGUUGUUGCAaCGCc------GGCCA-------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.