Results 61 - 64 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12416 | 3' | -54.6 | NC_003324.1 | + | 4852 | 1.13 | 0.000688 |
Target: 5'- cGGCAACAACGUUGCGGCCGGUCGAGCc -3' miRNA: 3'- -CCGUUGUUGCAACGCCGGCCAGCUCG- -5' |
|||||||
12416 | 3' | -54.6 | NC_003324.1 | + | 4697 | 0.67 | 0.718346 |
Target: 5'- cGCAACAACGaccaggGCGGCUGGcUgGAa- -3' miRNA: 3'- cCGUUGUUGCaa----CGCCGGCC-AgCUcg -5' |
|||||||
12416 | 3' | -54.6 | NC_003324.1 | + | 3159 | 0.66 | 0.799528 |
Target: 5'- uGGCAAgAGCGggagcgccgUGCGGCCa-UUGAGa -3' miRNA: 3'- -CCGUUgUUGCa--------ACGCCGGccAGCUCg -5' |
|||||||
12416 | 3' | -54.6 | NC_003324.1 | + | 1276 | 0.67 | 0.749729 |
Target: 5'- --uGACGACGUUcggaucGCGGCCGGauuUC-AGCg -3' miRNA: 3'- ccgUUGUUGCAA------CGCCGGCC---AGcUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home