miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12416 5' -58.4 NC_003324.1 + 5456 0.66 0.555652
Target:  5'- --cGCUggGUCAGGCaGGCGgcGUCGCc -3'
miRNA:   3'- accCGG--CAGUCCGaCCGCaaUAGCGa -5'
12416 5' -58.4 NC_003324.1 + 10243 0.67 0.463183
Target:  5'- cGGGCCGagAGGUcgGGCaUUGucUCGCg -3'
miRNA:   3'- aCCCGGCagUCCGa-CCGcAAU--AGCGa -5'
12416 5' -58.4 NC_003324.1 + 28192 0.68 0.406213
Target:  5'- gUGGGC--UCGGGCagGGCGUUagacggcgaaGUCGCg -3'
miRNA:   3'- -ACCCGgcAGUCCGa-CCGCAA----------UAGCGa -5'
12416 5' -58.4 NC_003324.1 + 7653 0.69 0.388223
Target:  5'- cGcGCCGgcagugCcGGCUGGCGUuuaugUGUCGCUg -3'
miRNA:   3'- aCcCGGCa-----GuCCGACCGCA-----AUAGCGA- -5'
12416 5' -58.4 NC_003324.1 + 56059 0.7 0.328725
Target:  5'- -cGGCCGUCggcuuccAGGCUGGCGaaccCGCg -3'
miRNA:   3'- acCCGGCAG-------UCCGACCGCaauaGCGa -5'
12416 5' -58.4 NC_003324.1 + 21109 0.7 0.329515
Target:  5'- -cGGCuuccaCGUCGGGCUGGCGcUUG-CGCa -3'
miRNA:   3'- acCCG-----GCAGUCCGACCGC-AAUaGCGa -5'
12416 5' -58.4 NC_003324.1 + 49321 0.71 0.264045
Target:  5'- cGGGcCCGUCGGGCugcccgaucaUGGCG---UCGCa -3'
miRNA:   3'- aCCC-GGCAGUCCG----------ACCGCaauAGCGa -5'
12416 5' -58.4 NC_003324.1 + 4886 1.07 0.000646
Target:  5'- aUGGGCCGUCAGGCUGGCGUUAUCGCUu -3'
miRNA:   3'- -ACCCGGCAGUCCGACCGCAAUAGCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.