Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12417 | 3' | -56.6 | NC_003324.1 | + | 49651 | 0.75 | 0.236633 |
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Target: 5'- uUCGA-CGACGCUGCCGauauCAAGGGCg -3' miRNA: 3'- gAGCUaGCUGUGGCGGCg---GUUCCUGg -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 49973 | 0.7 | 0.429095 |
|
Target: 5'- -gCGAUCGGCGCUGCC-CUgauGGGGGCa -3' miRNA: 3'- gaGCUAGCUGUGGCGGcGG---UUCCUGg -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 51722 | 0.67 | 0.623381 |
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Target: 5'- -gCGAggcCGACGCaaUCGCCGAGGGCg -3' miRNA: 3'- gaGCUa--GCUGUGgcGGCGGUUCCUGg -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 52477 | 0.66 | 0.70877 |
|
Target: 5'- aUCGGcUCGACcucguagacuuuGCCGCgGCCAGacGGAUg -3' miRNA: 3'- gAGCU-AGCUG------------UGGCGgCGGUU--CCUGg -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 52820 | 0.66 | 0.666321 |
|
Target: 5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3' miRNA: 3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 52980 | 0.69 | 0.497286 |
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Target: 5'- -aCGAgcgCGAC-CUGCCGCCAAugaagcGGAUCc -3' miRNA: 3'- gaGCUa--GCUGuGGCGGCGGUU------CCUGG- -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 53395 | 0.66 | 0.677005 |
|
Target: 5'- uUUGAUCuGGCAUCGCgGUCAcGGcGCCu -3' miRNA: 3'- gAGCUAG-CUGUGGCGgCGGUuCC-UGG- -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 54241 | 0.72 | 0.34198 |
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Target: 5'- -gCGAaggcgCGGCACCgGuuGCCAuGGACCg -3' miRNA: 3'- gaGCUa----GCUGUGG-CggCGGUuCCUGG- -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 54413 | 0.66 | 0.677005 |
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Target: 5'- aCUCcc-CGGgACCGCUGCC--GGGCCu -3' miRNA: 3'- -GAGcuaGCUgUGGCGGCGGuuCCUGG- -5' |
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| 12417 | 3' | -56.6 | NC_003324.1 | + | 57137 | 0.67 | 0.633053 |
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Target: 5'- gCUCGAaacccugcUGACGCCcCCgacugagugcgaaGCCAAGGGCCu -3' miRNA: 3'- -GAGCUa-------GCUGUGGcGG-------------CGGUUCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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