miRNA display CGI


Results 81 - 90 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 34719 0.66 0.677005
Target:  5'- gCUCu-UCGACauGCUGgaCGCCGAGGugCg -3'
miRNA:   3'- -GAGcuAGCUG--UGGCg-GCGGUUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 48268 0.66 0.666321
Target:  5'- uCUCGGagaaccagCGaACGCgGCCGaUAGGGACCa -3'
miRNA:   3'- -GAGCUa-------GC-UGUGgCGGCgGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 26060 0.66 0.655608
Target:  5'- aUCGAUCuggucuggGGCGCCGaaggcaccaaCGCCAgcaauggucAGGGCCu -3'
miRNA:   3'- gAGCUAG--------CUGUGGCg---------GCGGU---------UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 13416 0.66 0.655608
Target:  5'- uUUGGUcCGGCgcgGCUGCCGUCGAGcACCu -3'
miRNA:   3'- gAGCUA-GCUG---UGGCGGCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 15101 0.67 0.644873
Target:  5'- -aUGAUCGACcuGCCGUCGCCuuu-GCCc -3'
miRNA:   3'- gaGCUAGCUG--UGGCGGCGGuuccUGG- -5'
12417 3' -56.6 NC_003324.1 + 29151 0.67 0.644873
Target:  5'- -aCGAguUCGGCGuguCCGUCGAGGACCu -3'
miRNA:   3'- gaGCU--AGCUGUggcGGCGGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 15284 0.67 0.634128
Target:  5'- uUCGAgguuUCGuCcCCGCCGUCAcGGGCg -3'
miRNA:   3'- gAGCU----AGCuGuGGCGGCGGUuCCUGg -5'
12417 3' -56.6 NC_003324.1 + 38323 0.67 0.634128
Target:  5'- -gCGAUCGGCAuuCCGgCGCUgaaaGAGGAUUu -3'
miRNA:   3'- gaGCUAGCUGU--GGCgGCGG----UUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 6823 0.67 0.630904
Target:  5'- uCUgGAUCGGCGCCGuuGgCCAccuuuaccgaugucGGGAg- -3'
miRNA:   3'- -GAgCUAGCUGUGGCggC-GGU--------------UCCUgg -5'
12417 3' -56.6 NC_003324.1 + 21388 0.67 0.623381
Target:  5'- aUCGAg-GAUAUCGCCGgCGAGGcggcgaacgcgGCCg -3'
miRNA:   3'- gAGCUagCUGUGGCGGCgGUUCC-----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.