Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 51722 | 0.67 | 0.623381 |
Target: 5'- -gCGAggcCGACGCaaUCGCCGAGGGCg -3' miRNA: 3'- gaGCUa--GCUGUGgcGGCGGUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 37639 | 0.67 | 0.612641 |
Target: 5'- --gGAUCGACAggagGUCGCCGAGGugguCCg -3' miRNA: 3'- gagCUAGCUGUgg--CGGCGGUUCCu---GG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 15432 | 0.68 | 0.591218 |
Target: 5'- aCUCGAgggagcaguUUGACGCgaagGuuGCCAGGGGCg -3' miRNA: 3'- -GAGCU---------AGCUGUGg---CggCGGUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 47575 | 0.68 | 0.569927 |
Target: 5'- -cCGAUCGACcCuCGCCGUCGA--GCCg -3' miRNA: 3'- gaGCUAGCUGuG-GCGGCGGUUccUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 18316 | 0.68 | 0.569927 |
Target: 5'- cCUUGGU-GAgACCGCCaaagcgggcGCCGAGGAUUg -3' miRNA: 3'- -GAGCUAgCUgUGGCGG---------CGGUUCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 33820 | 0.68 | 0.566748 |
Target: 5'- aUCGAUUGcggcuuGCACgGCCGCCucgcggcaaucguaGAGGuCCa -3' miRNA: 3'- gAGCUAGC------UGUGgCGGCGG--------------UUCCuGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 17619 | 0.68 | 0.548828 |
Target: 5'- gUUGAgcaCGAUGCCGCCGagcucgggcCCGAGGAUa -3' miRNA: 3'- gAGCUa--GCUGUGGCGGC---------GGUUCCUGg -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 13333 | 0.69 | 0.507432 |
Target: 5'- gCUCGA-CGGCAgCCG-CGCC--GGACCa -3' miRNA: 3'- -GAGCUaGCUGU-GGCgGCGGuuCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 16340 | 0.69 | 0.507432 |
Target: 5'- -gCGA-CGGCGuuGCCGUCGaucgcgucguccAGGACCu -3' miRNA: 3'- gaGCUaGCUGUggCGGCGGU------------UCCUGG- -5' |
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12417 | 3' | -56.6 | NC_003324.1 | + | 52980 | 0.69 | 0.497286 |
Target: 5'- -aCGAgcgCGAC-CUGCCGCCAAugaagcGGAUCc -3' miRNA: 3'- gaGCUa--GCUGuGGCGGCGGUU------CCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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