miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 5' -51.4 NC_003324.1 + 30322 0.66 0.904435
Target:  5'- -cGAUGGUgucggcGGUGGCGuCGcUCGGCg -3'
miRNA:   3'- gaCUAUCGaau---UCGCCGC-GCuAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 57044 0.7 0.670064
Target:  5'- -gGGUugGGCUgggGAGCGGCGgCGAgggcgcggaugccuUCGACg -3'
miRNA:   3'- gaCUA--UCGAa--UUCGCCGC-GCU--------------AGCUG- -5'
12417 5' -51.4 NC_003324.1 + 39643 0.7 0.707059
Target:  5'- gCUGAcgUGGCgccAGGCGGgacgcucccCGUGGUCGACg -3'
miRNA:   3'- -GACU--AUCGaa-UUCGCC---------GCGCUAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 2821 0.69 0.739963
Target:  5'- -aGAUuGCgccacugUGGGC-GCGCGAUCGGCu -3'
miRNA:   3'- gaCUAuCGa------AUUCGcCGCGCUAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 30139 0.69 0.771825
Target:  5'- -cGGUGucGCgaccGGCGGCGUGAUgGGCg -3'
miRNA:   3'- gaCUAU--CGaau-UCGCCGCGCUAgCUG- -5'
12417 5' -51.4 NC_003324.1 + 30760 0.68 0.812104
Target:  5'- gCUGGUuuGGCccggcGUGGCGCGAUCcGCg -3'
miRNA:   3'- -GACUA--UCGaauu-CGCCGCGCUAGcUG- -5'
12417 5' -51.4 NC_003324.1 + 8737 0.68 0.8217
Target:  5'- uUGGcGGCggugucggagAAGuCGGUGCGAUCGAUc -3'
miRNA:   3'- gACUaUCGaa--------UUC-GCCGCGCUAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 48823 0.66 0.890009
Target:  5'- gCUGAUGGCcUGcagccugcuGGCGccgaCGCGGUUGGCg -3'
miRNA:   3'- -GACUAUCGaAU---------UCGCc---GCGCUAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 20520 0.66 0.895187
Target:  5'- aUGAcGGCcgGAGCuccGGCcaugaguaccgcuuGCGAUCGACg -3'
miRNA:   3'- gACUaUCGaaUUCG---CCG--------------CGCUAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 5192 0.66 0.897364
Target:  5'- -aGAcUGGCaggaaaAAGCGGCGCaGAUCGuCg -3'
miRNA:   3'- gaCU-AUCGaa----UUCGCCGCG-CUAGCuG- -5'
12417 5' -51.4 NC_003324.1 + 5081 1.11 0.001709
Target:  5'- cCUGAUAGCUUAAGCGGCGCGAUCGACg -3'
miRNA:   3'- -GACUAUCGAAUUCGCCGCGCUAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 5412 0.66 0.886226
Target:  5'- -aGAUGGCgcccgcaccuGCGGCGcCGAguucuucuccgcaUCGACg -3'
miRNA:   3'- gaCUAUCGaauu------CGCCGC-GCU-------------AGCUG- -5'
12417 5' -51.4 NC_003324.1 + 42244 0.67 0.83752
Target:  5'- uCUGAUAGUgcucacgguucucgUUGAGaccuacagGGCGCGgGUCGGCa -3'
miRNA:   3'- -GACUAUCG--------------AAUUCg-------CCGCGC-UAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 38347 0.67 0.831083
Target:  5'- -cGAgGGCaccgGGGCGGCGCuGGUCGcCg -3'
miRNA:   3'- gaCUaUCGaa--UUCGCCGCG-CUAGCuG- -5'
12417 5' -51.4 NC_003324.1 + 38583 0.68 0.802307
Target:  5'- gUGAUgcGGUUcugcGAGCGG-GCGAUUGACa -3'
miRNA:   3'- gACUA--UCGAa---UUCGCCgCGCUAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 43596 0.7 0.673451
Target:  5'- cCUGAUA-CUU-GGCGGuCGCGcUCGACu -3'
miRNA:   3'- -GACUAUcGAAuUCGCC-GCGCuAGCUG- -5'
12417 5' -51.4 NC_003324.1 + 51928 0.72 0.594105
Target:  5'- -aGAUGGU---GGCGGCGUGAgcuacagucuccUCGACa -3'
miRNA:   3'- gaCUAUCGaauUCGCCGCGCU------------AGCUG- -5'
12417 5' -51.4 NC_003324.1 + 18117 0.72 0.549282
Target:  5'- aUGAccuUAGCgcgcAGCGGCGUGuauUCGACg -3'
miRNA:   3'- gACU---AUCGaau-UCGCCGCGCu--AGCUG- -5'
12417 5' -51.4 NC_003324.1 + 31026 0.81 0.195803
Target:  5'- uUGGUAGCgac--CGGCGCGGUCGGCg -3'
miRNA:   3'- gACUAUCGaauucGCCGCGCUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.