Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12418 | 3' | -54.7 | NC_003324.1 | + | 29266 | 0.67 | 0.691085 |
Target: 5'- cGCCGG-GCUCGCGcUCgAUCGGCG-GAUu -3' miRNA: 3'- -CGGCCuUGGGCGC-AG-UAGCUGUaCUA- -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 20444 | 0.67 | 0.680207 |
Target: 5'- gGCCGGAGCuCCGgcCGUCAUUGAgAa--- -3' miRNA: 3'- -CGGCCUUG-GGC--GCAGUAGCUgUacua -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 21520 | 0.68 | 0.658324 |
Target: 5'- gGUCGGAcggccGCCacgGCG-CAUCGAUGUGAUg -3' miRNA: 3'- -CGGCCU-----UGGg--CGCaGUAGCUGUACUA- -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 46023 | 0.68 | 0.636345 |
Target: 5'- aCCGGGACCCGUuucCAUUGGC-UGAUc -3' miRNA: 3'- cGGCCUUGGGCGca-GUAGCUGuACUA- -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 430 | 0.69 | 0.603371 |
Target: 5'- cCCGGAGCCCGCGaauGUcCGACAUc-- -3' miRNA: 3'- cGGCCUUGGGCGCag-UA-GCUGUAcua -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 54290 | 0.69 | 0.600081 |
Target: 5'- uGCUGGAagGCCUGCGUCugcgccgucugcacGUCcGugGUGAUa -3' miRNA: 3'- -CGGCCU--UGGGCGCAG--------------UAG-CugUACUA- -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 48620 | 0.69 | 0.600081 |
Target: 5'- gGUCGGcGCCCGCauccGgcuccgccgcaacaUCAUCGGCAUGAg -3' miRNA: 3'- -CGGCCuUGGGCG----C--------------AGUAGCUGUACUa -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 54155 | 0.69 | 0.581495 |
Target: 5'- aCgGGAGCuggCCGCGUCAugUCGGCGUGu- -3' miRNA: 3'- cGgCCUUG---GGCGCAGU--AGCUGUACua -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 21489 | 0.69 | 0.570616 |
Target: 5'- uGCCGGAugCCGCGccCGUCG-CGUu-- -3' miRNA: 3'- -CGGCCUugGGCGCa-GUAGCuGUAcua -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 15068 | 0.69 | 0.570616 |
Target: 5'- cGCUGGAAguCCUGCG-CAUaggugcCGACGUGAUg -3' miRNA: 3'- -CGGCCUU--GGGCGCaGUA------GCUGUACUA- -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 31173 | 0.7 | 0.549017 |
Target: 5'- cCCGGccugcgccaucaGGCCCGgGUUAUCcGACGUGAa -3' miRNA: 3'- cGGCC------------UUGGGCgCAGUAG-CUGUACUa -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 16807 | 0.7 | 0.549017 |
Target: 5'- cGCCGGGcagauuGCCCaGCGcugCAUCGACAaGGg -3' miRNA: 3'- -CGGCCU------UGGG-CGCa--GUAGCUGUaCUa -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 5559 | 0.7 | 0.517124 |
Target: 5'- cGCCGcAACCUucgccgcggGCGUCAUCGGCcUGAc -3' miRNA: 3'- -CGGCcUUGGG---------CGCAGUAGCUGuACUa -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 18374 | 0.7 | 0.506656 |
Target: 5'- gGCCGGGgcagcgauuGCCCGCG-CGUCGGCc-GAUu -3' miRNA: 3'- -CGGCCU---------UGGGCGCaGUAGCUGuaCUA- -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 17512 | 0.71 | 0.443995 |
Target: 5'- aCCGGGcUCCGCGUCAgaccgacgagggCGACGUGGc -3' miRNA: 3'- cGGCCUuGGGCGCAGUa-----------GCUGUACUa -5' |
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12418 | 3' | -54.7 | NC_003324.1 | + | 5301 | 1.07 | 0.001731 |
Target: 5'- gGCCGGAACCCGCGUCAUCGACAUGAUc -3' miRNA: 3'- -CGGCCUUGGGCGCAGUAGCUGUACUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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