miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12418 5' -55.7 NC_003324.1 + 36653 0.67 0.65938
Target:  5'- aCGGCGAaaucaucgagaaagUCUCGAUGCgCAuguACGuCGCCCu -3'
miRNA:   3'- -GCUGCU--------------AGAGCUGUG-GU---UGCcGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 30870 0.68 0.651862
Target:  5'- gGGCGAgacgUUCGACAgCAagauggauACGGCGCa- -3'
miRNA:   3'- gCUGCUa---GAGCUGUgGU--------UGCCGCGgg -5'
12418 5' -55.7 NC_003324.1 + 26467 0.68 0.641107
Target:  5'- uCGGCGAcaucaauugCUCGACcUCGGCaGCGCUCg -3'
miRNA:   3'- -GCUGCUa--------GAGCUGuGGUUGcCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 48821 0.68 0.641107
Target:  5'- uGAUGGcCUgcagccugcUGGCGCCGACgcgguuGGCGCCCu -3'
miRNA:   3'- gCUGCUaGA---------GCUGUGGUUG------CCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 35026 0.68 0.630346
Target:  5'- cCGAUGAUCagggCGGCGCaGAUGaagagcaggaGCGCCCg -3'
miRNA:   3'- -GCUGCUAGa---GCUGUGgUUGC----------CGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 13304 0.68 0.630346
Target:  5'- -aACGAUCggGACGCCGAaaagcuugaGGUGCUCg -3'
miRNA:   3'- gcUGCUAGagCUGUGGUUg--------CCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 30065 0.68 0.630346
Target:  5'- cCGcCGGUCgCGACACCGgccgcuGCGGCuUCCu -3'
miRNA:   3'- -GCuGCUAGaGCUGUGGU------UGCCGcGGG- -5'
12418 5' -55.7 NC_003324.1 + 53396 0.68 0.630346
Target:  5'- --uUGAUCU-GGCAUCGcggucACGGCGCCUa -3'
miRNA:   3'- gcuGCUAGAgCUGUGGU-----UGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 31902 0.68 0.623888
Target:  5'- aGuACGGUCUCGAucguaaggcuuggcuCGCCGACGuuGCCg -3'
miRNA:   3'- gC-UGCUAGAGCU---------------GUGGUUGCcgCGGg -5'
12418 5' -55.7 NC_003324.1 + 4363 0.68 0.619585
Target:  5'- gGAC-AUCUUGcCACCGGCGGaaaCGCCg -3'
miRNA:   3'- gCUGcUAGAGCuGUGGUUGCC---GCGGg -5'
12418 5' -55.7 NC_003324.1 + 34615 0.68 0.619585
Target:  5'- gGACGcgCUCugcaguuugcGCACCu-CGGCGUCCa -3'
miRNA:   3'- gCUGCuaGAGc---------UGUGGuuGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 17700 0.68 0.619585
Target:  5'- --cCGAgCUCGGCGgcaucgugcUCAACGGCGCgCCg -3'
miRNA:   3'- gcuGCUaGAGCUGU---------GGUUGCCGCG-GG- -5'
12418 5' -55.7 NC_003324.1 + 49413 0.68 0.619585
Target:  5'- -cGCGAUCggCGAgccCGgCAGCGGCGCUUg -3'
miRNA:   3'- gcUGCUAGa-GCU---GUgGUUGCCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 1379 0.68 0.618509
Target:  5'- uGcCGAUCcgugacaUCGauGCGCCGACGGUGCUg -3'
miRNA:   3'- gCuGCUAG-------AGC--UGUGGUUGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 43001 0.68 0.608835
Target:  5'- cCGGCGcag-UGAcCGCCAAUGGuCGCCCc -3'
miRNA:   3'- -GCUGCuagaGCU-GUGGUUGCC-GCGGG- -5'
12418 5' -55.7 NC_003324.1 + 28597 0.68 0.608835
Target:  5'- aGugG-UCUCGgu-CCGAagGGCGCCCg -3'
miRNA:   3'- gCugCuAGAGCuguGGUUg-CCGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 33155 0.68 0.608835
Target:  5'- cCGGCGuaagCGACACCAACuGGCaccGCUCc -3'
miRNA:   3'- -GCUGCuagaGCUGUGGUUG-CCG---CGGG- -5'
12418 5' -55.7 NC_003324.1 + 38300 0.68 0.608835
Target:  5'- aGAgGAUUUCGGCAacuacguguUCGACGaggagaaguGCGCCCa -3'
miRNA:   3'- gCUgCUAGAGCUGU---------GGUUGC---------CGCGGG- -5'
12418 5' -55.7 NC_003324.1 + 1520 0.68 0.60776
Target:  5'- gCGAgGAUC-CGGCGgCAguggugcGCGGCGCUa -3'
miRNA:   3'- -GCUgCUAGaGCUGUgGU-------UGCCGCGGg -5'
12418 5' -55.7 NC_003324.1 + 50667 0.68 0.60776
Target:  5'- gCGACGGUUgCGaaGCGCCAaucuucgACGGUGaCCCc -3'
miRNA:   3'- -GCUGCUAGaGC--UGUGGU-------UGCCGC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.