Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12420 | 3' | -52.8 | NC_003324.1 | + | 6092 | 1.11 | 0.001419 |
Target: 5'- aGGGCAAGUCGGUCCAACUUGGCGAAGu -3' miRNA: 3'- -CCCGUUCAGCCAGGUUGAACCGCUUC- -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 16128 | 0.71 | 0.580996 |
Target: 5'- cGGCAAGUC-GUCgAACUUGGCc--- -3' miRNA: 3'- cCCGUUCAGcCAGgUUGAACCGcuuc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 20798 | 0.71 | 0.592049 |
Target: 5'- uGGCGAGgcggCGGaCCGugUUGGUGAc- -3' miRNA: 3'- cCCGUUCa---GCCaGGUugAACCGCUuc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 24288 | 0.7 | 0.647648 |
Target: 5'- uGGGCAcGgCGG---AGCUUGGCGAAGg -3' miRNA: 3'- -CCCGUuCaGCCaggUUGAACCGCUUC- -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 34470 | 0.69 | 0.669856 |
Target: 5'- cGGCGAGUCGccuaUCuCGaucGCUUGGCGAAc -3' miRNA: 3'- cCCGUUCAGCc---AG-GU---UGAACCGCUUc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 28230 | 0.69 | 0.701776 |
Target: 5'- cGGCAacuacaaGGUCGGccgcaUCCGcCUUGGCGGGu -3' miRNA: 3'- cCCGU-------UCAGCC-----AGGUuGAACCGCUUc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 29929 | 0.69 | 0.713747 |
Target: 5'- cGGCGcGgcccaCGGUCCGGacgGGCGAGGg -3' miRNA: 3'- cCCGUuCa----GCCAGGUUgaaCCGCUUC- -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 33069 | 0.68 | 0.724542 |
Target: 5'- -uGCGGGaCGGUUCGGCaUUGGCGAc- -3' miRNA: 3'- ccCGUUCaGCCAGGUUG-AACCGCUuc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 40264 | 0.68 | 0.74584 |
Target: 5'- -uGCGug-CGGUCCGggGCUUGGCGGGu -3' miRNA: 3'- ccCGUucaGCCAGGU--UGAACCGCUUc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 54354 | 0.67 | 0.819805 |
Target: 5'- cGGGCAcuaucuccgcaaGGUCGGUCgCAcCUUcgaaacgaucuaucaGGCGAAc -3' miRNA: 3'- -CCCGU------------UCAGCCAG-GUuGAA---------------CCGCUUc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 28608 | 0.66 | 0.834496 |
Target: 5'- cGGCAGGccucaguggucUCGGUCCGAag-GGCGc-- -3' miRNA: 3'- cCCGUUC-----------AGCCAGGUUgaaCCGCuuc -5' |
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12420 | 3' | -52.8 | NC_003324.1 | + | 16447 | 0.66 | 0.868703 |
Target: 5'- gGGGCu-GUU-GUCgGGCUUGGCGGc- -3' miRNA: 3'- -CCCGuuCAGcCAGgUUGAACCGCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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