miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12420 5' -56.9 NC_003324.1 + 54137 0.66 0.682143
Target:  5'- cGCCUGCGCau-UGGCucgacgGGAgCUGGCCgCGu -3'
miRNA:   3'- -CGGAUGCGgcuAUCG------CCU-GACUGG-GC- -5'
12420 5' -56.9 NC_003324.1 + 14829 0.66 0.671455
Target:  5'- uCCUGgGCgGcAUcGGCGGACUGAUCUu -3'
miRNA:   3'- cGGAUgCGgC-UA-UCGCCUGACUGGGc -5'
12420 5' -56.9 NC_003324.1 + 4984 0.66 0.670384
Target:  5'- cGCCUGCggaGCCGAaAGCGauaacgccagccuGAC-GGCCCa -3'
miRNA:   3'- -CGGAUG---CGGCUaUCGC-------------CUGaCUGGGc -5'
12420 5' -56.9 NC_003324.1 + 14668 0.66 0.62522
Target:  5'- cGCCUGCGCCGccggccgcuugcgccGGCaGGCcgcGACCCa -3'
miRNA:   3'- -CGGAUGCGGCua-------------UCGcCUGa--CUGGGc -5'
12420 5' -56.9 NC_003324.1 + 54304 0.67 0.617684
Target:  5'- cGUCUGCGCCGucugcacguccGUGGUGauauCUGGCUCGa -3'
miRNA:   3'- -CGGAUGCGGC-----------UAUCGCcu--GACUGGGC- -5'
12420 5' -56.9 NC_003324.1 + 1666 0.67 0.616607
Target:  5'- cGCCUgcugACGCUGAcGGCGGuucguccuggcacGCUGAUCUc -3'
miRNA:   3'- -CGGA----UGCGGCUaUCGCC-------------UGACUGGGc -5'
12420 5' -56.9 NC_003324.1 + 54450 0.67 0.606929
Target:  5'- aGCCgGCGgCGAgAGCGGaaaGCUuGCCCGc -3'
miRNA:   3'- -CGGaUGCgGCUaUCGCC---UGAcUGGGC- -5'
12420 5' -56.9 NC_003324.1 + 25218 0.67 0.58549
Target:  5'- uGCCUGCGCCGAcuGaCGGuucgagcacCUGGCCg- -3'
miRNA:   3'- -CGGAUGCGGCUauC-GCCu--------GACUGGgc -5'
12420 5' -56.9 NC_003324.1 + 37067 0.68 0.55363
Target:  5'- aCCUugGCCGAauccgcgaaugAGCGG-CUGACgUGa -3'
miRNA:   3'- cGGAugCGGCUa----------UCGCCuGACUGgGC- -5'
12420 5' -56.9 NC_003324.1 + 1712 0.68 0.522305
Target:  5'- cGCCUugGaCCGAgcucgacgaGGUGGACgagagcGAUCCGg -3'
miRNA:   3'- -CGGAugC-GGCUa--------UCGCCUGa-----CUGGGC- -5'
12420 5' -56.9 NC_003324.1 + 20612 0.68 0.508942
Target:  5'- uGCCgGCGCUGAUgggcgcuugcggucGGCGGGCacGCCCu -3'
miRNA:   3'- -CGGaUGCGGCUA--------------UCGCCUGacUGGGc -5'
12420 5' -56.9 NC_003324.1 + 5332 0.69 0.491689
Target:  5'- cGCCUGCcGCUGGUgcGGCGGccaACUGauGCUCGa -3'
miRNA:   3'- -CGGAUG-CGGCUA--UCGCC---UGAC--UGGGC- -5'
12420 5' -56.9 NC_003324.1 + 16009 0.69 0.452221
Target:  5'- aGCCUucgcaaACGCaugGAcGGCGGACUGGCUgGu -3'
miRNA:   3'- -CGGA------UGCGg--CUaUCGCCUGACUGGgC- -5'
12420 5' -56.9 NC_003324.1 + 8266 0.69 0.452221
Target:  5'- cGCgCgcCGCCGGgcagugAGCagGGACUGGCCCu -3'
miRNA:   3'- -CG-GauGCGGCUa-----UCG--CCUGACUGGGc -5'
12420 5' -56.9 NC_003324.1 + 8499 0.7 0.433145
Target:  5'- aCCUGCaGCCG---GCGGAaauccCUGACCCGc -3'
miRNA:   3'- cGGAUG-CGGCuauCGCCU-----GACUGGGC- -5'
12420 5' -56.9 NC_003324.1 + 47901 0.72 0.337248
Target:  5'- cGUgUGCGCCGAUGGCcGGCUuAUCCGc -3'
miRNA:   3'- -CGgAUGCGGCUAUCGcCUGAcUGGGC- -5'
12420 5' -56.9 NC_003324.1 + 22161 0.76 0.179509
Target:  5'- cGCCgACGCCGAUGuaGGAggcCUGAUCCGg -3'
miRNA:   3'- -CGGaUGCGGCUAUcgCCU---GACUGGGC- -5'
12420 5' -56.9 NC_003324.1 + 6129 1.1 0.000695
Target:  5'- cGCCUACGCCGAUAGCGGACUGACCCGc -3'
miRNA:   3'- -CGGAUGCGGCUAUCGCCUGACUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.