miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12421 5' -54.6 NC_003324.1 + 29197 0.66 0.751053
Target:  5'- -gAugCGCGugcuUCUCGUC-CGGCaGCa -3'
miRNA:   3'- aaUugGCGUu---AGAGCAGaGCCGgCGa -5'
12421 5' -54.6 NC_003324.1 + 27537 0.66 0.751053
Target:  5'- -gAGCgCGCGgaccuGUUUCGggCUCGGCUGCc -3'
miRNA:   3'- aaUUG-GCGU-----UAGAGCa-GAGCCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 56735 0.66 0.70818
Target:  5'- gUGACCGUGAggugagGUCUCuGGCCGCc -3'
miRNA:   3'- aAUUGGCGUUagag--CAGAG-CCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 23961 0.66 0.70818
Target:  5'- ----aCGCGAUCgUCGaggagCUCGGuCCGCUg -3'
miRNA:   3'- aauugGCGUUAG-AGCa----GAGCC-GGCGA- -5'
12421 5' -54.6 NC_003324.1 + 3410 0.66 0.70818
Target:  5'- --cACUGCAGUCggcgacCGUCUUcgGGCUGCa -3'
miRNA:   3'- aauUGGCGUUAGa-----GCAGAG--CCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 5225 0.67 0.675177
Target:  5'- -cGACCGCAAUCcgguUCGagcaUCagUUGGCCGCc -3'
miRNA:   3'- aaUUGGCGUUAG----AGC----AG--AGCCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 45101 0.67 0.662966
Target:  5'- -gGACCGCGccAUCUUGuucaggcUCUCGaCCGCUg -3'
miRNA:   3'- aaUUGGCGU--UAGAGC-------AGAGCcGGCGA- -5'
12421 5' -54.6 NC_003324.1 + 38944 0.67 0.641797
Target:  5'- gUAGgCGCcGUCUCGaccCUUGGCCGUc -3'
miRNA:   3'- aAUUgGCGuUAGAGCa--GAGCCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 49506 0.68 0.61948
Target:  5'- -gGGCgGCAuUCUgGcacUCUCGGCCGUa -3'
miRNA:   3'- aaUUGgCGUuAGAgC---AGAGCCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 7420 0.68 0.597209
Target:  5'- -cAACCGCAucGUCagCGUgccCUCGGCgCGCg -3'
miRNA:   3'- aaUUGGCGU--UAGa-GCA---GAGCCG-GCGa -5'
12421 5' -54.6 NC_003324.1 + 42993 0.68 0.593877
Target:  5'- gUGACCGCcaauGGUCgccccgccgcugggUCGuUCUCGGUCGCa -3'
miRNA:   3'- aAUUGGCG----UUAG--------------AGC-AGAGCCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 38121 0.69 0.542215
Target:  5'- ---uCCGCcGUCUCGUgUCGGUCGg- -3'
miRNA:   3'- aauuGGCGuUAGAGCAgAGCCGGCga -5'
12421 5' -54.6 NC_003324.1 + 3056 0.69 0.520667
Target:  5'- -cGGgCGCGGUCUC-UCUCaauGGCCGCa -3'
miRNA:   3'- aaUUgGCGUUAGAGcAGAG---CCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 32372 0.7 0.510017
Target:  5'- gUAGCCGguGaacuggucgggcUCUCGcaccacCUCGGCCGCg -3'
miRNA:   3'- aAUUGGCguU------------AGAGCa-----GAGCCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 47016 0.7 0.510017
Target:  5'- -gAACCGCAgcggcuAUCUCGUCgauugaggCGGuuGCc -3'
miRNA:   3'- aaUUGGCGU------UAGAGCAGa-------GCCggCGa -5'
12421 5' -54.6 NC_003324.1 + 43405 0.71 0.438362
Target:  5'- cUGACCGCAGUCgugggugGUCUCGGCgacgGCg -3'
miRNA:   3'- aAUUGGCGUUAGag-----CAGAGCCGg---CGa -5'
12421 5' -54.6 NC_003324.1 + 21281 0.71 0.409457
Target:  5'- --uGCCGC--UUUCaUCUCGGCCGCg -3'
miRNA:   3'- aauUGGCGuuAGAGcAGAGCCGGCGa -5'
12421 5' -54.6 NC_003324.1 + 19068 0.74 0.291388
Target:  5'- -cAGCCGCcguAUUucccgcucggUCGUUUCGGCCGCUa -3'
miRNA:   3'- aaUUGGCGu--UAG----------AGCAGAGCCGGCGA- -5'
12421 5' -54.6 NC_003324.1 + 53058 0.74 0.291388
Target:  5'- aUUGGCgGCAGgucgcgCUCGUCUCGGCgCGUc -3'
miRNA:   3'- -AAUUGgCGUUa-----GAGCAGAGCCG-GCGa -5'
12421 5' -54.6 NC_003324.1 + 10108 0.74 0.276873
Target:  5'- -aGGCCGCAcaauUCUUGaUUUCGGCCGCc -3'
miRNA:   3'- aaUUGGCGUu---AGAGC-AGAGCCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.