Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12421 | 5' | -54.6 | NC_003324.1 | + | 27537 | 0.66 | 0.751053 |
Target: 5'- -gAGCgCGCGgaccuGUUUCGggCUCGGCUGCc -3' miRNA: 3'- aaUUG-GCGU-----UAGAGCa-GAGCCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 29197 | 0.66 | 0.751053 |
Target: 5'- -gAugCGCGugcuUCUCGUC-CGGCaGCa -3' miRNA: 3'- aaUugGCGUu---AGAGCAGaGCCGgCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 56735 | 0.66 | 0.70818 |
Target: 5'- gUGACCGUGAggugagGUCUCuGGCCGCc -3' miRNA: 3'- aAUUGGCGUUagag--CAGAG-CCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 23961 | 0.66 | 0.70818 |
Target: 5'- ----aCGCGAUCgUCGaggagCUCGGuCCGCUg -3' miRNA: 3'- aauugGCGUUAG-AGCa----GAGCC-GGCGA- -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 3410 | 0.66 | 0.70818 |
Target: 5'- --cACUGCAGUCggcgacCGUCUUcgGGCUGCa -3' miRNA: 3'- aauUGGCGUUAGa-----GCAGAG--CCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 5225 | 0.67 | 0.675177 |
Target: 5'- -cGACCGCAAUCcgguUCGagcaUCagUUGGCCGCc -3' miRNA: 3'- aaUUGGCGUUAG----AGC----AG--AGCCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 45101 | 0.67 | 0.662966 |
Target: 5'- -gGACCGCGccAUCUUGuucaggcUCUCGaCCGCUg -3' miRNA: 3'- aaUUGGCGU--UAGAGC-------AGAGCcGGCGA- -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 38944 | 0.67 | 0.641797 |
Target: 5'- gUAGgCGCcGUCUCGaccCUUGGCCGUc -3' miRNA: 3'- aAUUgGCGuUAGAGCa--GAGCCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 49506 | 0.68 | 0.61948 |
Target: 5'- -gGGCgGCAuUCUgGcacUCUCGGCCGUa -3' miRNA: 3'- aaUUGgCGUuAGAgC---AGAGCCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 7420 | 0.68 | 0.597209 |
Target: 5'- -cAACCGCAucGUCagCGUgccCUCGGCgCGCg -3' miRNA: 3'- aaUUGGCGU--UAGa-GCA---GAGCCG-GCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 42993 | 0.68 | 0.593877 |
Target: 5'- gUGACCGCcaauGGUCgccccgccgcugggUCGuUCUCGGUCGCa -3' miRNA: 3'- aAUUGGCG----UUAG--------------AGC-AGAGCCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 38121 | 0.69 | 0.542215 |
Target: 5'- ---uCCGCcGUCUCGUgUCGGUCGg- -3' miRNA: 3'- aauuGGCGuUAGAGCAgAGCCGGCga -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 3056 | 0.69 | 0.520667 |
Target: 5'- -cGGgCGCGGUCUC-UCUCaauGGCCGCa -3' miRNA: 3'- aaUUgGCGUUAGAGcAGAG---CCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 47016 | 0.7 | 0.510017 |
Target: 5'- -gAACCGCAgcggcuAUCUCGUCgauugaggCGGuuGCc -3' miRNA: 3'- aaUUGGCGU------UAGAGCAGa-------GCCggCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 32372 | 0.7 | 0.510017 |
Target: 5'- gUAGCCGguGaacuggucgggcUCUCGcaccacCUCGGCCGCg -3' miRNA: 3'- aAUUGGCguU------------AGAGCa-----GAGCCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 43405 | 0.71 | 0.438362 |
Target: 5'- cUGACCGCAGUCgugggugGUCUCGGCgacgGCg -3' miRNA: 3'- aAUUGGCGUUAGag-----CAGAGCCGg---CGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 21281 | 0.71 | 0.409457 |
Target: 5'- --uGCCGC--UUUCaUCUCGGCCGCg -3' miRNA: 3'- aauUGGCGuuAGAGcAGAGCCGGCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 53058 | 0.74 | 0.291388 |
Target: 5'- aUUGGCgGCAGgucgcgCUCGUCUCGGCgCGUc -3' miRNA: 3'- -AAUUGgCGUUa-----GAGCAGAGCCG-GCGa -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 19068 | 0.74 | 0.291388 |
Target: 5'- -cAGCCGCcguAUUucccgcucggUCGUUUCGGCCGCUa -3' miRNA: 3'- aaUUGGCGu--UAG----------AGCAGAGCCGGCGA- -5' |
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12421 | 5' | -54.6 | NC_003324.1 | + | 10108 | 0.74 | 0.276873 |
Target: 5'- -aGGCCGCAcaauUCUUGaUUUCGGCCGCc -3' miRNA: 3'- aaUUGGCGUu---AGAGC-AGAGCCGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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