miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12423 5' -59.9 NC_003324.1 + 41915 0.66 0.454036
Target:  5'- cGUCGCAGUCGcCG-CAUCCGgAGGu- -3'
miRNA:   3'- -CAGCGUCGGUcGCaGUAGGCgUCCca -5'
12423 5' -59.9 NC_003324.1 + 35392 0.66 0.473588
Target:  5'- --aGCAGCCGGCGcaAUCCGCcGGc- -3'
miRNA:   3'- cagCGUCGGUCGCagUAGGCGuCCca -5'
12423 5' -59.9 NC_003324.1 + 8497 0.67 0.372782
Target:  5'- -cUGCAGCCGGCGgaaaucccugacccgCAUCaCGCGGGu- -3'
miRNA:   3'- caGCGUCGGUCGCa--------------GUAG-GCGUCCca -5'
12423 5' -59.9 NC_003324.1 + 18508 0.68 0.338023
Target:  5'- gGUCGCgcagaccAGaCCAGCGUCGccuucgugugguUCCucGCAGGGUc -3'
miRNA:   3'- -CAGCG-------UC-GGUCGCAGU------------AGG--CGUCCCA- -5'
12423 5' -59.9 NC_003324.1 + 47906 0.69 0.300527
Target:  5'- -gCGCcgauGGCCGGC-UUAUCCGCuGGGUc -3'
miRNA:   3'- caGCG----UCGGUCGcAGUAGGCGuCCCA- -5'
12423 5' -59.9 NC_003324.1 + 29810 0.7 0.252661
Target:  5'- aGUCGC-GCCaacuucugGGCGaUCAUCUGCAGGcGUg -3'
miRNA:   3'- -CAGCGuCGG--------UCGC-AGUAGGCGUCC-CA- -5'
12423 5' -59.9 NC_003324.1 + 34483 0.7 0.259096
Target:  5'- cGUCGUcuuguuGGCCGGCGUCuuGUUCGUcGGGUc -3'
miRNA:   3'- -CAGCG------UCGGUCGCAG--UAGGCGuCCCA- -5'
12423 5' -59.9 NC_003324.1 + 30265 0.7 0.269667
Target:  5'- cGUUGCAGagGGCGUCuucgaagaauugCCGCAGGGc -3'
miRNA:   3'- -CAGCGUCggUCGCAGua----------GGCGUCCCa -5'
12423 5' -59.9 NC_003324.1 + 12999 0.74 0.130772
Target:  5'- uUCGCGGCUGGCG--AUCUGCAGGGc -3'
miRNA:   3'- cAGCGUCGGUCGCagUAGGCGUCCCa -5'
12423 5' -59.9 NC_003324.1 + 8296 1.07 0.000427
Target:  5'- cGUCGCAGCCAGCGUCAUCCGCAGGGUa -3'
miRNA:   3'- -CAGCGUCGGUCGCAGUAGGCGUCCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.