miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12424 5' -55 NC_003324.1 + 33437 0.66 0.76672
Target:  5'- cGGAGCCGgcaaccacGCACCGGGAcgAUGacCAUGu -3'
miRNA:   3'- aCCUCGGC--------UGUGGCUCU--UACcaGUGC- -5'
12424 5' -55 NC_003324.1 + 9384 0.67 0.714727
Target:  5'- uUGGuGCCGcCACCGAuGAcgaGGUCuCGg -3'
miRNA:   3'- -ACCuCGGCuGUGGCU-CUua-CCAGuGC- -5'
12424 5' -55 NC_003324.1 + 15205 0.67 0.714727
Target:  5'- gUGGcgccguGUCGACGCCGAGAccgAUGG-CAUc -3'
miRNA:   3'- -ACCu-----CGGCUGUGGCUCU---UACCaGUGc -5'
12424 5' -55 NC_003324.1 + 30799 0.67 0.714727
Target:  5'- aGGcGGCCGACGCCaAGAAUuGGUgggaCACc -3'
miRNA:   3'- aCC-UCGGCUGUGGcUCUUA-CCA----GUGc -5'
12424 5' -55 NC_003324.1 + 44422 0.68 0.627905
Target:  5'- gUGcGGGCaccgGGCGCCGAGAcuucGGUCGCu -3'
miRNA:   3'- -AC-CUCGg---CUGUGGCUCUua--CCAGUGc -5'
12424 5' -55 NC_003324.1 + 27757 0.68 0.616963
Target:  5'- aGGAGaagcuCGGCGCCacgcauGAG-GUGGUCGCGa -3'
miRNA:   3'- aCCUCg----GCUGUGG------CUCuUACCAGUGC- -5'
12424 5' -55 NC_003324.1 + 18151 0.68 0.606034
Target:  5'- cGGuuucGCCGACACCGgcaAGGucGUGGcUCugGg -3'
miRNA:   3'- aCCu---CGGCUGUGGC---UCU--UACC-AGugC- -5'
12424 5' -55 NC_003324.1 + 48446 0.68 0.606034
Target:  5'- ---cGCCG-CGCCGAGAagAUGGUgCGCGc -3'
miRNA:   3'- accuCGGCuGUGGCUCU--UACCA-GUGC- -5'
12424 5' -55 NC_003324.1 + 20835 0.68 0.604942
Target:  5'- aGGAgcgcaugGCCGACAUCGAGAAgcaGG-CGCc -3'
miRNA:   3'- aCCU-------CGGCUGUGGCUCUUa--CCaGUGc -5'
12424 5' -55 NC_003324.1 + 2851 0.69 0.562626
Target:  5'- gGGAGCgucaACgGCCGAGAggugcgagGUGGUCACGc -3'
miRNA:   3'- aCCUCGgc--UG-UGGCUCU--------UACCAGUGC- -5'
12424 5' -55 NC_003324.1 + 36976 0.71 0.45889
Target:  5'- gUGG-GUCGACGCCGAcauUGGUUGCGc -3'
miRNA:   3'- -ACCuCGGCUGUGGCUcuuACCAGUGC- -5'
12424 5' -55 NC_003324.1 + 16149 0.73 0.352652
Target:  5'- gGGGGCCGcgccaggcaucgcugGCACCGAGGcgGG-CACc -3'
miRNA:   3'- aCCUCGGC---------------UGUGGCUCUuaCCaGUGc -5'
12424 5' -55 NC_003324.1 + 8696 1.09 0.001297
Target:  5'- gUGGAGCCGACACCGAGAAUGGUCACGu -3'
miRNA:   3'- -ACCUCGGCUGUGGCUCUUACCAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.