miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12425 5' -49.5 NC_003324.1 + 53459 0.66 0.941906
Target:  5'- cGUAUCaACGCcGGCAAgUACA-CCCGc -3'
miRNA:   3'- aCAUAGaUGUGuCCGUU-GUGUaGGGU- -5'
12425 5' -49.5 NC_003324.1 + 50060 0.7 0.811218
Target:  5'- cGUAUCU-CGCGGGCggUu--UCCCGa -3'
miRNA:   3'- aCAUAGAuGUGUCCGuuGuguAGGGU- -5'
12425 5' -49.5 NC_003324.1 + 45672 0.66 0.956163
Target:  5'- ------aAUACAGGCGcGCACAUCCgCAg -3'
miRNA:   3'- acauagaUGUGUCCGU-UGUGUAGG-GU- -5'
12425 5' -49.5 NC_003324.1 + 32309 0.66 0.956163
Target:  5'- ---cUCUGCGC-GGCGcCGCAUCuCCGg -3'
miRNA:   3'- acauAGAUGUGuCCGUuGUGUAG-GGU- -5'
12425 5' -49.5 NC_003324.1 + 28713 0.67 0.903109
Target:  5'- --gGUCUGgGCAGGCGccgaaaccugcucuGCAguUCCCGc -3'
miRNA:   3'- acaUAGAUgUGUCCGU--------------UGUguAGGGU- -5'
12425 5' -49.5 NC_003324.1 + 25292 0.66 0.936555
Target:  5'- cGUcaGUCgGCGCAGGCAACu--UCCUu -3'
miRNA:   3'- aCA--UAGaUGUGUCCGUUGuguAGGGu -5'
12425 5' -49.5 NC_003324.1 + 13626 0.66 0.956163
Target:  5'- ------cGCGCAGGCGAUcgGCAUCCg- -3'
miRNA:   3'- acauagaUGUGUCCGUUG--UGUAGGgu -5'
12425 5' -49.5 NC_003324.1 + 9802 1.1 0.003185
Target:  5'- cUGUAUCUACACAGGCAACACAUCCCAa -3'
miRNA:   3'- -ACAUAGAUGUGUCCGUUGUGUAGGGU- -5'
12425 5' -49.5 NC_003324.1 + 6242 0.73 0.635024
Target:  5'- -aUGUCgu--CGGGCAGCGCAUUCCAg -3'
miRNA:   3'- acAUAGauguGUCCGUUGUGUAGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.