miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12426 5' -55.5 NC_003324.1 + 32365 0.68 0.645683
Target:  5'- gCCGuUGUCGCcaGCGuguucuCUGGCGAGcguCCc -3'
miRNA:   3'- aGGC-ACAGCGa-UGCu-----GACCGCUCu--GG- -5'
12426 5' -55.5 NC_003324.1 + 57180 0.76 0.228984
Target:  5'- cCCuUG-CGCUGCGAg-GGCGAGGCCa -3'
miRNA:   3'- aGGcACaGCGAUGCUgaCCGCUCUGG- -5'
12426 5' -55.5 NC_003324.1 + 28988 0.7 0.507177
Target:  5'- gCCGgaaucgGUCGCaGCGAa-GGaCGAGGCCg -3'
miRNA:   3'- aGGCa-----CAGCGaUGCUgaCC-GCUCUGG- -5'
12426 5' -55.5 NC_003324.1 + 24157 0.69 0.591611
Target:  5'- aCCGUGgCGCaGCGcACcGGCGAGAa- -3'
miRNA:   3'- aGGCACaGCGaUGC-UGaCCGCUCUgg -5'
12426 5' -55.5 NC_003324.1 + 30141 0.68 0.602394
Target:  5'- gCCgGUGUCGCgaccgGCGGCgugaugGGCGGcGGCa -3'
miRNA:   3'- aGG-CACAGCGa----UGCUGa-----CCGCU-CUGg -5'
12426 5' -55.5 NC_003324.1 + 39075 0.68 0.602394
Target:  5'- aCCGgcucacUCGCUGCGGCUGcGCaGGGCa -3'
miRNA:   3'- aGGCac----AGCGAUGCUGAC-CGcUCUGg -5'
12426 5' -55.5 NC_003324.1 + 41951 0.68 0.613202
Target:  5'- aCUGcUGcUCGCcAUGACcGGCGAGACg -3'
miRNA:   3'- aGGC-AC-AGCGaUGCUGaCCGCUCUGg -5'
12426 5' -55.5 NC_003324.1 + 3652 0.68 0.613202
Target:  5'- --aGUGUCGCUcuGCuGCaUGGCGGGcGCCa -3'
miRNA:   3'- aggCACAGCGA--UGcUG-ACCGCUC-UGG- -5'
12426 5' -55.5 NC_003324.1 + 57403 0.68 0.642436
Target:  5'- cCCGUGUCcucacugcuggaggGCU-CGGCggaGGCGAGGgCg -3'
miRNA:   3'- aGGCACAG--------------CGAuGCUGa--CCGCUCUgG- -5'
12426 5' -55.5 NC_003324.1 + 31313 0.67 0.688776
Target:  5'- gCCGgcggCGCUgGCG-CUGGCGGGGgCa -3'
miRNA:   3'- aGGCaca-GCGA-UGCuGACCGCUCUgG- -5'
12426 5' -55.5 NC_003324.1 + 30385 0.66 0.719528
Target:  5'- cUCCGgcGUCGCUACaGGCauguucGGCGGcuugggcGACCg -3'
miRNA:   3'- -AGGCa-CAGCGAUG-CUGa-----CCGCU-------CUGG- -5'
12426 5' -55.5 NC_003324.1 + 10640 1.13 0.00064
Target:  5'- cUCCGUGUCGCUACGACUGGCGAGACCa -3'
miRNA:   3'- -AGGCACAGCGAUGCUGACCGCUCUGG- -5'
12426 5' -55.5 NC_003324.1 + 38702 0.67 0.688776
Target:  5'- gUCGgcaaaGUCGCUcCGACgGGuCGAGACa -3'
miRNA:   3'- aGGCa----CAGCGAuGCUGaCC-GCUCUGg -5'
12426 5' -55.5 NC_003324.1 + 26808 0.67 0.678056
Target:  5'- gCCGUG-CGCUugG-CUGGCuuuGGcGCCg -3'
miRNA:   3'- aGGCACaGCGAugCuGACCGc--UC-UGG- -5'
12426 5' -55.5 NC_003324.1 + 32083 0.67 0.667294
Target:  5'- cUUCGgccUCGCUGCGccucggcucgucGCcGGUGAGGCCg -3'
miRNA:   3'- -AGGCac-AGCGAUGC------------UGaCCGCUCUGG- -5'
12426 5' -55.5 NC_003324.1 + 32265 0.7 0.501033
Target:  5'- gUCGUGUCGggACGcucgccagagaacacGCUGGCGAcaacGGCCu -3'
miRNA:   3'- aGGCACAGCgaUGC---------------UGACCGCU----CUGG- -5'
12426 5' -55.5 NC_003324.1 + 28237 0.72 0.390755
Target:  5'- gCCGcGUCaucgacuGCUGCGACUGGUGccGGAUCg -3'
miRNA:   3'- aGGCaCAG-------CGAUGCUGACCGC--UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.