Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12429 | 3' | -50.1 | NC_003324.1 | + | 49973 | 0.68 | 0.884825 |
Target: 5'- gCGAUCGGCGcuGCCCugaUGGGGgcaaugaUCGCc -3' miRNA: 3'- gGCUAGUUGUu-CGGGua-ACUCC-------AGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 3586 | 0.68 | 0.877056 |
Target: 5'- gCCGAUCcaGugGAGCaaAUUGGcauccguGGUCGCg -3' miRNA: 3'- -GGCUAG--UugUUCGggUAACU-------CCAGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 21106 | 0.69 | 0.861568 |
Target: 5'- aCCu-UCGACAAGCCCAagGAuuucGG-CGCg -3' miRNA: 3'- -GGcuAGUUGUUCGGGUaaCU----CCaGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 7864 | 0.69 | 0.853048 |
Target: 5'- gCCGcggCGGCaAAGCCCGUUGcGaUCGCg -3' miRNA: 3'- -GGCua-GUUG-UUCGGGUAACuCcAGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 43570 | 0.69 | 0.853048 |
Target: 5'- gCCGcgCAACGucAGCCgAUUGAGGg--- -3' miRNA: 3'- -GGCuaGUUGU--UCGGgUAACUCCagcg -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 49478 | 0.7 | 0.797159 |
Target: 5'- gCCGAUC-GCGAucgaguauuuGCCCGggucgcuuucGAGGUCGCc -3' miRNA: 3'- -GGCUAGuUGUU----------CGGGUaa--------CUCCAGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 34860 | 0.71 | 0.766623 |
Target: 5'- gCCGAUCgAGCAGGCCCuugacgauUUGaAGGaUCaGCg -3' miRNA: 3'- -GGCUAG-UUGUUCGGGu-------AAC-UCC-AG-CG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 14848 | 0.71 | 0.766623 |
Target: 5'- aCUGAUCuuCAAGUCgGaUGAGGaCGCg -3' miRNA: 3'- -GGCUAGuuGUUCGGgUaACUCCaGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 50016 | 0.71 | 0.766623 |
Target: 5'- -aGAUCGGCAAGCgC--UGGGGcCGCu -3' miRNA: 3'- ggCUAGUUGUUCGgGuaACUCCaGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 22450 | 0.71 | 0.766623 |
Target: 5'- gCCGAgaucacgCAGCAugGGCUCGUcGAGGUagCGCa -3' miRNA: 3'- -GGCUa------GUUGU--UCGGGUAaCUCCA--GCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 25993 | 0.71 | 0.74445 |
Target: 5'- aCCaGAUCGAUAGGCCCGacUUcGGGGUgacugagCGCg -3' miRNA: 3'- -GG-CUAGUUGUUCGGGU--AA-CUCCA-------GCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 29653 | 0.73 | 0.657256 |
Target: 5'- aUCGAgCGACGAGgCC-UUGAGGcCGCu -3' miRNA: 3'- -GGCUaGUUGUUCgGGuAACUCCaGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 17361 | 0.73 | 0.657256 |
Target: 5'- ----aCGAUAGGCCUugagGAGGUCGCg -3' miRNA: 3'- ggcuaGUUGUUCGGGuaa-CUCCAGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 49414 | 0.76 | 0.491317 |
Target: 5'- gCGAUCGGCGAGCCCGgcaGcGG-CGCu -3' miRNA: 3'- gGCUAGUUGUUCGGGUaa-CuCCaGCG- -5' |
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12429 | 3' | -50.1 | NC_003324.1 | + | 11656 | 1.16 | 0.001464 |
Target: 5'- gCCGAUCAACAAGCCCAUUGAGGUCGCa -3' miRNA: 3'- -GGCUAGUUGUUCGGGUAACUCCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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