miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12429 5' -52 NC_003324.1 + 34019 0.66 0.890309
Target:  5'- gUCGgGGCCgauGCAGAAGGCGAg---- -3'
miRNA:   3'- -GGUgCCGGag-UGUCUUCUGCUagaua -5'
12429 5' -52 NC_003324.1 + 7401 0.66 0.86686
Target:  5'- cCCuCGGCg-CGCGGAAcGACGGUCa-- -3'
miRNA:   3'- -GGuGCCGgaGUGUCUU-CUGCUAGaua -5'
12429 5' -52 NC_003324.1 + 7761 0.67 0.849941
Target:  5'- gCAC-GCCUCGCAGGgaGGcGCGAUCg-- -3'
miRNA:   3'- gGUGcCGGAGUGUCU--UC-UGCUAGaua -5'
12429 5' -52 NC_003324.1 + 49008 0.67 0.832069
Target:  5'- gCgACGGCCUUgacCAGGucGACGAUCUu- -3'
miRNA:   3'- -GgUGCCGGAGu--GUCUu-CUGCUAGAua -5'
12429 5' -52 NC_003324.1 + 5075 0.67 0.813318
Target:  5'- aCGCGGCCUgAUAGcuuaagcggcgcGAucGACGAUCUGc -3'
miRNA:   3'- gGUGCCGGAgUGUC------------UU--CUGCUAGAUa -5'
12429 5' -52 NC_003324.1 + 29931 0.68 0.803639
Target:  5'- gCGCGGCC-CACGGuccGGACGggCg-- -3'
miRNA:   3'- gGUGCCGGaGUGUCu--UCUGCuaGaua -5'
12429 5' -52 NC_003324.1 + 52454 0.68 0.792776
Target:  5'- gCCGCGGCCagACGGAugcaugcAGGCGAg---- -3'
miRNA:   3'- -GGUGCCGGagUGUCU-------UCUGCUagaua -5'
12429 5' -52 NC_003324.1 + 45944 0.7 0.676255
Target:  5'- aUCACGGCCUCGCAucAGGCGc----- -3'
miRNA:   3'- -GGUGCCGGAGUGUcuUCUGCuagaua -5'
12429 5' -52 NC_003324.1 + 22949 0.71 0.630241
Target:  5'- gCACGGUUcauucagUCGCAGAuGGACGAUCUu- -3'
miRNA:   3'- gGUGCCGG-------AGUGUCU-UCUGCUAGAua -5'
12429 5' -52 NC_003324.1 + 35767 0.71 0.624616
Target:  5'- uCCAUGGCCUCAauaauGAGaucgagcauggcgauGGCGAUCUGg -3'
miRNA:   3'- -GGUGCCGGAGUgu---CUU---------------CUGCUAGAUa -5'
12429 5' -52 NC_003324.1 + 36825 0.71 0.597666
Target:  5'- uCCACgGGCCUCGCAucGGAUGAUg--- -3'
miRNA:   3'- -GGUG-CCGGAGUGUcuUCUGCUAgaua -5'
12429 5' -52 NC_003324.1 + 7133 0.79 0.222788
Target:  5'- gCGCGGCCUCGCGGAGGaaGCGAUa--- -3'
miRNA:   3'- gGUGCCGGAGUGUCUUC--UGCUAgaua -5'
12429 5' -52 NC_003324.1 + 11690 1.09 0.002411
Target:  5'- gCCACGGCCUCACAGAAGACGAUCUAUa -3'
miRNA:   3'- -GGUGCCGGAGUGUCUUCUGCUAGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.