miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12430 5' -55.5 NC_003324.1 + 12055 1.07 0.001114
Target:  5'- aCGACGCAGCGCAUAUACCGCAGCCAAa -3'
miRNA:   3'- -GCUGCGUCGCGUAUAUGGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 48512 0.76 0.19103
Target:  5'- uCGGCGCGGCGCucuucgaugaggcgGUgaagcguuccaagGCCGCAGCCGAg -3'
miRNA:   3'- -GCUGCGUCGCGua------------UA-------------UGGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 26272 0.75 0.207206
Target:  5'- aCGACGCAGaCGCAgcc-CCGCAGCgAGa -3'
miRNA:   3'- -GCUGCGUC-GCGUauauGGCGUCGgUU- -5'
12430 5' -55.5 NC_003324.1 + 44418 0.74 0.236791
Target:  5'- gGGCGCAGCGCGc--GCCGUGGCUg- -3'
miRNA:   3'- gCUGCGUCGCGUauaUGGCGUCGGuu -5'
12430 5' -55.5 NC_003324.1 + 27061 0.74 0.243117
Target:  5'- gCGACGCGGCGU---UACCGUuguGGCCGGu -3'
miRNA:   3'- -GCUGCGUCGCGuauAUGGCG---UCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 24484 0.74 0.243117
Target:  5'- -cGCGCAGUGCAUAU-CCGCAuGCCc- -3'
miRNA:   3'- gcUGCGUCGCGUAUAuGGCGU-CGGuu -5'
12430 5' -55.5 NC_003324.1 + 22010 0.74 0.243117
Target:  5'- uCGACGaGGCGCAUGUcgAgCGCAGCCu- -3'
miRNA:   3'- -GCUGCgUCGCGUAUA--UgGCGUCGGuu -5'
12430 5' -55.5 NC_003324.1 + 21168 0.72 0.33026
Target:  5'- cCGACGCAGCacGCGcc-GCgGCGGCCGAc -3'
miRNA:   3'- -GCUGCGUCG--CGUauaUGgCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 25431 0.71 0.355357
Target:  5'- aGGCGUuGCGCAg--GCCGCcccAGCCGAc -3'
miRNA:   3'- gCUGCGuCGCGUauaUGGCG---UCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 32381 0.71 0.355357
Target:  5'- gCGGCGCcGCGCAgagGCCGUugucGCCAGc -3'
miRNA:   3'- -GCUGCGuCGCGUauaUGGCGu---CGGUU- -5'
12430 5' -55.5 NC_003324.1 + 22475 0.71 0.372821
Target:  5'- uCGAgGUAGCGCAUG-ACCGUgaacauuucGGCCAu -3'
miRNA:   3'- -GCUgCGUCGCGUAUaUGGCG---------UCGGUu -5'
12430 5' -55.5 NC_003324.1 + 33606 0.7 0.400089
Target:  5'- -uGCGCAGCGCGU-UGCCGaCGGCgAu -3'
miRNA:   3'- gcUGCGUCGCGUAuAUGGC-GUCGgUu -5'
12430 5' -55.5 NC_003324.1 + 42261 0.7 0.427627
Target:  5'- cCGGCGCAGUGCcgucguucggcaaGUAcgAUCGCGGCCc- -3'
miRNA:   3'- -GCUGCGUCGCG-------------UAUa-UGGCGUCGGuu -5'
12430 5' -55.5 NC_003324.1 + 380 0.7 0.438362
Target:  5'- -aGCGCGGCGCGgcuaaccACCGCcaAGCCAu -3'
miRNA:   3'- gcUGCGUCGCGUaua----UGGCG--UCGGUu -5'
12430 5' -55.5 NC_003324.1 + 34520 0.7 0.438362
Target:  5'- cCGACGCuuGCcaAUGUGCCGuCGGCCGAc -3'
miRNA:   3'- -GCUGCGu-CGcgUAUAUGGC-GUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 23270 0.7 0.448254
Target:  5'- aCGAUGCAGaGCG-GUACCGCGcucGCCGAc -3'
miRNA:   3'- -GCUGCGUCgCGUaUAUGGCGU---CGGUU- -5'
12430 5' -55.5 NC_003324.1 + 44300 0.69 0.458268
Target:  5'- uCGACGaaccgGGCGCG-GUGgCGCGGCCGAu -3'
miRNA:   3'- -GCUGCg----UCGCGUaUAUgGCGUCGGUU- -5'
12430 5' -55.5 NC_003324.1 + 3245 0.69 0.478647
Target:  5'- uCGGCGCGGUGCcgGUGCUuucggaGCucGCCAAg -3'
miRNA:   3'- -GCUGCGUCGCGuaUAUGG------CGu-CGGUU- -5'
12430 5' -55.5 NC_003324.1 + 26892 0.69 0.478647
Target:  5'- gCGGCGCcaaagccagccaAGCGCAcg-GCCGCGucuGCCAAg -3'
miRNA:   3'- -GCUGCG------------UCGCGUauaUGGCGU---CGGUU- -5'
12430 5' -55.5 NC_003324.1 + 30749 0.69 0.510017
Target:  5'- cCGGCGUGGCGCG-AUcCgCGCAGCUAu -3'
miRNA:   3'- -GCUGCGUCGCGUaUAuG-GCGUCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.