miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 3' -61.6 NC_003324.1 + 2412 0.67 0.374553
Target:  5'- cCGCCaacGCCGAUGaugaAGCCgccgaCGCcGGCGGc -3'
miRNA:   3'- -GCGG---CGGCUGCg---UCGGa----GCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 36174 0.67 0.374553
Target:  5'- aCGCCGCCGACcugcuGCAGCaua-CUGAUGu -3'
miRNA:   3'- -GCGGCGGCUG-----CGUCGgagcGACUGCc -5'
12431 3' -61.6 NC_003324.1 + 1592 0.67 0.374553
Target:  5'- uGCCGCCGGau---CCUCGCUGGCc- -3'
miRNA:   3'- gCGGCGGCUgcgucGGAGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 48830 0.67 0.366307
Target:  5'- gCGCuuCGCUGAuggccUGCAGCCU-GCUGGCGc -3'
miRNA:   3'- -GCG--GCGGCU-----GCGUCGGAgCGACUGCc -5'
12431 3' -61.6 NC_003324.1 + 35396 0.67 0.366307
Target:  5'- cCGCagcaGCCGGCGCAauccGCCggCGCgauCGGa -3'
miRNA:   3'- -GCGg---CGGCUGCGU----CGGa-GCGacuGCC- -5'
12431 3' -61.6 NC_003324.1 + 26154 0.67 0.355775
Target:  5'- cCGCUGCUGGCggccuGCaucauucugucggcGGUCUCGCUG-CGGg -3'
miRNA:   3'- -GCGGCGGCUG-----CG--------------UCGGAGCGACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 55393 0.68 0.342327
Target:  5'- aGCCGCUGugGCAGCUUguuccaGCaGccGCGGc -3'
miRNA:   3'- gCGGCGGCugCGUCGGAg-----CGaC--UGCC- -5'
12431 3' -61.6 NC_003324.1 + 29308 0.68 0.342327
Target:  5'- aGCCGCCGucuuggugaGCGCA-CCguagUGCUGcCGGa -3'
miRNA:   3'- gCGGCGGC---------UGCGUcGGa---GCGACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 42974 0.68 0.319501
Target:  5'- cCGCCGCUGGgucguucucgguCGCAGauCCUCGCgGGcCGGc -3'
miRNA:   3'- -GCGGCGGCU------------GCGUC--GGAGCGaCU-GCC- -5'
12431 3' -61.6 NC_003324.1 + 14445 0.68 0.31215
Target:  5'- gCGCCcauGCCGGCGUccaagcaucggcGGaCCUUGCUGGCa- -3'
miRNA:   3'- -GCGG---CGGCUGCG------------UC-GGAGCGACUGcc -5'
12431 3' -61.6 NC_003324.1 + 30037 0.68 0.31215
Target:  5'- uGCCGCCGcuACGCAGgacgccCCUCGCccgucCGGa -3'
miRNA:   3'- gCGGCGGC--UGCGUC------GGAGCGacu--GCC- -5'
12431 3' -61.6 NC_003324.1 + 35397 0.69 0.297836
Target:  5'- gGCCGCCGcGCGCAugguuuccucGcCCUCGgUG-CGGg -3'
miRNA:   3'- gCGGCGGC-UGCGU----------C-GGAGCgACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 4987 0.69 0.297836
Target:  5'- aGCCGCCuGCGgAGCCgaaagCGauaacgccagcCUGACGGc -3'
miRNA:   3'- gCGGCGGcUGCgUCGGa----GC-----------GACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 49017 0.69 0.293642
Target:  5'- gGCCGCCcuCGCGGCCaUGCUucucaccucucccgcGGCGGc -3'
miRNA:   3'- gCGGCGGcuGCGUCGGaGCGA---------------CUGCC- -5'
12431 3' -61.6 NC_003324.1 + 21296 0.69 0.290872
Target:  5'- gGCCGCguuCGCcGCCUCGCcGGCGa -3'
miRNA:   3'- gCGGCGgcuGCGuCGGAGCGaCUGCc -5'
12431 3' -61.6 NC_003324.1 + 35100 0.69 0.264291
Target:  5'- uGCCGCCGcCGCuGCUgcuGCUG-CGGc -3'
miRNA:   3'- gCGGCGGCuGCGuCGGag-CGACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 22028 0.7 0.257961
Target:  5'- gCGCCGCCGACGagauGGCC-CGCauccacaagaaGugGGa -3'
miRNA:   3'- -GCGGCGGCUGCg---UCGGaGCGa----------CugCC- -5'
12431 3' -61.6 NC_003324.1 + 43214 0.7 0.254223
Target:  5'- uCGCCGUCGAggacggcaaccUGCGggacuuuggcauuauGCC-CGCUGGCGGa -3'
miRNA:   3'- -GCGGCGGCU-----------GCGU---------------CGGaGCGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 30062 0.7 0.251756
Target:  5'- aCGCCGCCGGuCGCGacaCCggcCGCUG-CGGc -3'
miRNA:   3'- -GCGGCGGCU-GCGUc--GGa--GCGACuGCC- -5'
12431 3' -61.6 NC_003324.1 + 38166 0.7 0.251756
Target:  5'- aCGgCGCCGACGC-GCUUCGCcagaaGGCGc -3'
miRNA:   3'- -GCgGCGGCUGCGuCGGAGCGa----CUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.