miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 5' -57.1 NC_003324.1 + 31810 0.68 0.5061
Target:  5'- aCGUCGGCGaGcCAAGCcuuacGAUCgAGACCGu -3'
miRNA:   3'- -GCGGCUGC-C-GUUCGa----CUAGgUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 48736 0.68 0.5061
Target:  5'- gCGUCGGCGccaGCAGGCUG---CAGGCCAu -3'
miRNA:   3'- -GCGGCUGC---CGUUCGACuagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 28626 0.68 0.5061
Target:  5'- aCGCCGccauguugagcGCGGCAGGCcucagUGGUCuCGGuCCGa -3'
miRNA:   3'- -GCGGC-----------UGCCGUUCG-----ACUAG-GUCuGGU- -5'
12431 5' -57.1 NC_003324.1 + 16020 0.68 0.495845
Target:  5'- aCGCaugGACGGCGgacuGGCUGGUgaUgAGGCCAa -3'
miRNA:   3'- -GCGg--CUGCCGU----UCGACUA--GgUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 4557 0.68 0.495845
Target:  5'- gCGCCGugauCGaGCGcGCgcaGGUCCAGGCCc -3'
miRNA:   3'- -GCGGCu---GC-CGUuCGa--CUAGGUCUGGu -5'
12431 5' -57.1 NC_003324.1 + 30251 0.68 0.495845
Target:  5'- cCGCCGAcaccauCGGCGA--UGAUgCGGGCCAa -3'
miRNA:   3'- -GCGGCU------GCCGUUcgACUAgGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 55147 0.68 0.475624
Target:  5'- uGCCGgcaACGGCuacaucuGGCUGAcaCAGGCCGg -3'
miRNA:   3'- gCGGC---UGCCGu------UCGACUagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 10270 0.69 0.455822
Target:  5'- gCGCCGAUGaGCAcuagccgaAGCUGA--CGGGCCGa -3'
miRNA:   3'- -GCGGCUGC-CGU--------UCGACUagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 28733 0.69 0.449969
Target:  5'- uGCCGAUGGCAccacgacgcgcgacaAgGCggcccgcaacGAUCCGGGCCAc -3'
miRNA:   3'- gCGGCUGCCGU---------------U-CGa---------CUAGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 39406 0.69 0.44609
Target:  5'- uCGCCagcGCGGCuucucgacaCUGAUCCAGAUCAu -3'
miRNA:   3'- -GCGGc--UGCCGuuc------GACUAGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 50787 0.69 0.44609
Target:  5'- aCGgCGACGGCAAuGCUGccacaCCGGAgCAg -3'
miRNA:   3'- -GCgGCUGCCGUU-CGACua---GGUCUgGU- -5'
12431 5' -57.1 NC_003324.1 + 8349 0.69 0.442229
Target:  5'- cCGUCGGCGGgGAGCUGcgucugucauggaaAUacauccgCCAGACCGa -3'
miRNA:   3'- -GCGGCUGCCgUUCGAC--------------UA-------GGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 22289 0.69 0.439346
Target:  5'- uGCgCGGCGGCAAGCccaccaacaucaccgUGGagcguucUCCGGAUCAg -3'
miRNA:   3'- gCG-GCUGCCGUUCG---------------ACU-------AGGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 51296 0.69 0.417607
Target:  5'- aGCCGcCGGCAGGCgucacGAUCauacggaAGACUAu -3'
miRNA:   3'- gCGGCuGCCGUUCGa----CUAGg------UCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 22254 0.7 0.39026
Target:  5'- uGCCGaucGCGGCGAGCUGcgCCuuGAUg- -3'
miRNA:   3'- gCGGC---UGCCGUUCGACuaGGu-CUGgu -5'
12431 5' -57.1 NC_003324.1 + 26442 0.7 0.364111
Target:  5'- uGCCGAacaGGUaucgcGAGCUGAaaCAGGCCGg -3'
miRNA:   3'- gCGGCUg--CCG-----UUCGACUagGUCUGGU- -5'
12431 5' -57.1 NC_003324.1 + 56127 0.71 0.355668
Target:  5'- aGCCGACGGCcguGGCgacuuuggcGAUCUucuuGACCAc -3'
miRNA:   3'- gCGGCUGCCGu--UCGa--------CUAGGu---CUGGU- -5'
12431 5' -57.1 NC_003324.1 + 28360 0.71 0.316317
Target:  5'- gCGCCGaACGcGCAAGCgauguagcuuccaccGAUCCGGcACCAg -3'
miRNA:   3'- -GCGGC-UGC-CGUUCGa--------------CUAGGUC-UGGU- -5'
12431 5' -57.1 NC_003324.1 + 6086 0.71 0.315549
Target:  5'- uCGCCGAgGGCAAGUcGGUCCAacuuGGCgAa -3'
miRNA:   3'- -GCGGCUgCCGUUCGaCUAGGU----CUGgU- -5'
12431 5' -57.1 NC_003324.1 + 54957 0.72 0.307947
Target:  5'- gCGCCGACauucGCGAGC--AUCCGGGCCu -3'
miRNA:   3'- -GCGGCUGc---CGUUCGacUAGGUCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.