miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12432 5' -54.2 NC_003324.1 + 50434 0.66 0.74541
Target:  5'- ---cGCuGGGcgUGgUGCAGCUCgcagGGCu -3'
miRNA:   3'- uagaCGuCCUuaACgACGUCGAG----CCG- -5'
12432 5' -54.2 NC_003324.1 + 44814 0.66 0.71273
Target:  5'- -gCUGCGGGGAgaagGggGCGGCgucaUUGGCg -3'
miRNA:   3'- uaGACGUCCUUaa--CgaCGUCG----AGCCG- -5'
12432 5' -54.2 NC_003324.1 + 46484 0.66 0.690503
Target:  5'- -aCUGCAGGAcuaccgcaaGCgccucaaggGUAGCUUGGCu -3'
miRNA:   3'- uaGACGUCCUuaa------CGa--------CGUCGAGCCG- -5'
12432 5' -54.2 NC_003324.1 + 26192 0.67 0.679293
Target:  5'- -gCUGCGGGGcugcGuCUGCGucguccccucGCUCGGCa -3'
miRNA:   3'- uaGACGUCCUuaa-C-GACGU----------CGAGCCG- -5'
12432 5' -54.2 NC_003324.1 + 16261 0.67 0.644295
Target:  5'- uUCUgGCGGGA---GCUGCGGUgcccgccUCGGUg -3'
miRNA:   3'- uAGA-CGUCCUuaaCGACGUCG-------AGCCG- -5'
12432 5' -54.2 NC_003324.1 + 29833 0.68 0.611444
Target:  5'- cAUCUGCAGGcGUggaaGCUGCuGUg-GGCu -3'
miRNA:   3'- -UAGACGUCCuUAa---CGACGuCGagCCG- -5'
12432 5' -54.2 NC_003324.1 + 27592 0.68 0.60014
Target:  5'- aAUUUGCgAGGGuuuUUGCUGCGcGUcCGGCu -3'
miRNA:   3'- -UAGACG-UCCUu--AACGACGU-CGaGCCG- -5'
12432 5' -54.2 NC_003324.1 + 34622 0.68 0.577629
Target:  5'- cUCUGCAGu--UUGC-GCAcCUCGGCg -3'
miRNA:   3'- uAGACGUCcuuAACGaCGUcGAGCCG- -5'
12432 5' -54.2 NC_003324.1 + 35333 0.69 0.537635
Target:  5'- -gCUGCGGuugcuGUUGCUGCGGUugcuguugugccuggUCGGCc -3'
miRNA:   3'- uaGACGUCcu---UAACGACGUCG---------------AGCCG- -5'
12432 5' -54.2 NC_003324.1 + 16515 0.69 0.533247
Target:  5'- gAUgUGCAGcGGAUcgGCcugUGCGuGCUCGGCg -3'
miRNA:   3'- -UAgACGUC-CUUAa-CG---ACGU-CGAGCCG- -5'
12432 5' -54.2 NC_003324.1 + 31099 0.71 0.448728
Target:  5'- -cUUGCGGcAAUgcGCUGCuGCUCGGCu -3'
miRNA:   3'- uaGACGUCcUUAa-CGACGuCGAGCCG- -5'
12432 5' -54.2 NC_003324.1 + 11664 0.72 0.390448
Target:  5'- aGUCUccgGCAGGAGccGCgggaGCAGCaUCGGCu -3'
miRNA:   3'- -UAGA---CGUCCUUaaCGa---CGUCG-AGCCG- -5'
12432 5' -54.2 NC_003324.1 + 13388 1.09 0.000952
Target:  5'- gAUCUGCAGGAAUUGCUGCAGCUCGGCc -3'
miRNA:   3'- -UAGACGUCCUUAACGACGUCGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.