miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12433 3' -53.7 NC_003324.1 + 23484 0.66 0.817585
Target:  5'- -cGCGGCcaacgagaaAGccGAGCGCGUCAaAGCGg -3'
miRNA:   3'- gaUGCCG---------UCacUUCGUGCAGUcUCGC- -5'
12433 3' -53.7 NC_003324.1 + 6131 0.66 0.813814
Target:  5'- -gAUGGCAG-GAugcuggacccuaagAGCAUGUCgucggcaGGAGCGg -3'
miRNA:   3'- gaUGCCGUCaCU--------------UCGUGCAG-------UCUCGC- -5'
12433 3' -53.7 NC_003324.1 + 29713 0.66 0.808099
Target:  5'- -gGCGGCGGcguugcgccaGAAGCAgG-CAGAGCc -3'
miRNA:   3'- gaUGCCGUCa---------CUUCGUgCaGUCUCGc -5'
12433 3' -53.7 NC_003324.1 + 38071 0.66 0.808099
Target:  5'- -cGCGGUacugcgccuucuGGcGAAGCGCGUCGGcGCc -3'
miRNA:   3'- gaUGCCG------------UCaCUUCGUGCAGUCuCGc -5'
12433 3' -53.7 NC_003324.1 + 1530 0.66 0.788571
Target:  5'- -gGCGGCAGUGguGCGCGgcgCuauGGCc -3'
miRNA:   3'- gaUGCCGUCACuuCGUGCa--Guc-UCGc -5'
12433 3' -53.7 NC_003324.1 + 26920 0.67 0.737042
Target:  5'- -gGCGGCGaucgacGAGGCACucagCGGAGCGg -3'
miRNA:   3'- gaUGCCGUca----CUUCGUGca--GUCUCGC- -5'
12433 3' -53.7 NC_003324.1 + 8735 0.67 0.715592
Target:  5'- -gGCGGCGGUGucgGAGaa-GUCGGuGCGa -3'
miRNA:   3'- gaUGCCGUCAC---UUCgugCAGUCuCGC- -5'
12433 3' -53.7 NC_003324.1 + 21270 0.67 0.715592
Target:  5'- ---aGGCGGUuGAGCACGaUCGcGAGCa -3'
miRNA:   3'- gaugCCGUCAcUUCGUGC-AGU-CUCGc -5'
12433 3' -53.7 NC_003324.1 + 49869 0.67 0.712343
Target:  5'- gUACGGCaAGUGAgccGGCgggcaaagaucgcuGCGUCGGcGCGc -3'
miRNA:   3'- gAUGCCG-UCACU---UCG--------------UGCAGUCuCGC- -5'
12433 3' -53.7 NC_003324.1 + 17692 0.68 0.704735
Target:  5'- -gGCGGCAucGUGcucaacGGCGCGcCGGGGCa -3'
miRNA:   3'- gaUGCCGU--CACu-----UCGUGCaGUCUCGc -5'
12433 3' -53.7 NC_003324.1 + 6908 0.69 0.649591
Target:  5'- --gUGGCAGcGAuagAGCACGUagucgaGGAGCGg -3'
miRNA:   3'- gauGCCGUCaCU---UCGUGCAg-----UCUCGC- -5'
12433 3' -53.7 NC_003324.1 + 1403 0.69 0.605109
Target:  5'- ---aGGgAGUcGAGCACGUCGGAGgCGu -3'
miRNA:   3'- gaugCCgUCAcUUCGUGCAGUCUC-GC- -5'
12433 3' -53.7 NC_003324.1 + 45831 0.72 0.476023
Target:  5'- gCUGCGGCgagaacAGUGAGGUggaaACGgcgCGGGGCGc -3'
miRNA:   3'- -GAUGCCG------UCACUUCG----UGCa--GUCUCGC- -5'
12433 3' -53.7 NC_003324.1 + 14316 1.1 0.001233
Target:  5'- aCUACGGCAGUGAAGCACGUCAGAGCGa -3'
miRNA:   3'- -GAUGCCGUCACUUCGUGCAGUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.