miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12434 3' -64.6 NC_003324.1 + 53190 0.66 0.275889
Target:  5'- -uGUGGUgGGUGGUaGCuGGCGGccGGCu -3'
miRNA:   3'- uuCGCCGgCCGCCG-CGuCCGCCa-UCG- -5'
12434 3' -64.6 NC_003324.1 + 9726 0.66 0.269309
Target:  5'- cAGCGcGuuGGCGuuGCcGGCGGUguuGGCc -3'
miRNA:   3'- uUCGC-CggCCGCcgCGuCCGCCA---UCG- -5'
12434 3' -64.6 NC_003324.1 + 47707 0.66 0.262218
Target:  5'- uGGCGGcCCGGuCGccgucauGCGCGGcGUGGUaaAGCu -3'
miRNA:   3'- uUCGCC-GGCC-GC-------CGCGUC-CGCCA--UCG- -5'
12434 3' -64.6 NC_003324.1 + 47987 0.67 0.24425
Target:  5'- cAGCGgauaaGCCGGCcaucGGCGCAGcaCGGUucGGCa -3'
miRNA:   3'- uUCGC-----CGGCCG----CCGCGUCc-GCCA--UCG- -5'
12434 3' -64.6 NC_003324.1 + 12279 0.67 0.24425
Target:  5'- -cGCGagaccguCCGGCGGCucguuccaguccGCAGaCGGUAGCg -3'
miRNA:   3'- uuCGCc------GGCCGCCG------------CGUCcGCCAUCG- -5'
12434 3' -64.6 NC_003324.1 + 10828 0.67 0.238295
Target:  5'- -uGauGUCGGUgaugacaacGGCGCuGGUGGUGGCu -3'
miRNA:   3'- uuCgcCGGCCG---------CCGCGuCCGCCAUCG- -5'
12434 3' -64.6 NC_003324.1 + 28708 0.67 0.226751
Target:  5'- aAGGCGGCCcgcaacgauccgGGCcacgagGGCgacaGCGGGCGGaAGCc -3'
miRNA:   3'- -UUCGCCGG------------CCG------CCG----CGUCCGCCaUCG- -5'
12434 3' -64.6 NC_003324.1 + 41539 0.67 0.21786
Target:  5'- -cGCGuGCCaaacgcuaacgacaGCGGCGCGGGCcuguuccucgcaGGUGGCc -3'
miRNA:   3'- uuCGC-CGGc-------------CGCCGCGUCCG------------CCAUCG- -5'
12434 3' -64.6 NC_003324.1 + 48978 0.68 0.194936
Target:  5'- uGGCGGgUGGCGGaguccuggaUGCGGGCGaaGGCg -3'
miRNA:   3'- uUCGCCgGCCGCC---------GCGUCCGCcaUCG- -5'
12434 3' -64.6 NC_003324.1 + 8412 0.68 0.188579
Target:  5'- -uGCGggucagggauuuccGCCGGCugcaGGUGCAGGCGGauuuGCg -3'
miRNA:   3'- uuCGC--------------CGGCCG----CCGCGUCCGCCau--CG- -5'
12434 3' -64.6 NC_003324.1 + 25507 0.69 0.175956
Target:  5'- gGGGCGGCCuGCGcaaCGCcuucuacccgAGGaCGGUAGCg -3'
miRNA:   3'- -UUCGCCGGcCGCc--GCG----------UCC-GCCAUCG- -5'
12434 3' -64.6 NC_003324.1 + 6221 0.69 0.158224
Target:  5'- cAGGCGGCgCGGgucaguccgcuauCGGCGUAGGCGcgGGUa -3'
miRNA:   3'- -UUCGCCG-GCC-------------GCCGCGUCCGCcaUCG- -5'
12434 3' -64.6 NC_003324.1 + 3537 0.69 0.154151
Target:  5'- gGAGCGGaaCCGGCugcaaacGGCGCuu-CGGUGGCg -3'
miRNA:   3'- -UUCGCC--GGCCG-------CCGCGuccGCCAUCG- -5'
12434 3' -64.6 NC_003324.1 + 14809 0.71 0.11557
Target:  5'- -cGCGGCCGGCaucGGCaGCuuccuGGGCGGcaucGGCg -3'
miRNA:   3'- uuCGCCGGCCG---CCG-CG-----UCCGCCa---UCG- -5'
12434 3' -64.6 NC_003324.1 + 18990 0.71 0.11557
Target:  5'- cGAGCGGgaaauaCGGCGGCuGCAcGCGGcUGGCc -3'
miRNA:   3'- -UUCGCCg-----GCCGCCG-CGUcCGCC-AUCG- -5'
12434 3' -64.6 NC_003324.1 + 13158 0.75 0.058559
Target:  5'- cGGCGGUCGGCGGC---GGCGGUaccGGCu -3'
miRNA:   3'- uUCGCCGGCCGCCGcguCCGCCA---UCG- -5'
12434 3' -64.6 NC_003324.1 + 30146 0.79 0.028408
Target:  5'- cAGCGGCCggugucgcgaccGGCGGCGUgauGGGCGGcGGCa -3'
miRNA:   3'- uUCGCCGG------------CCGCCGCG---UCCGCCaUCG- -5'
12434 3' -64.6 NC_003324.1 + 31317 0.89 0.004935
Target:  5'- -uGCGGCCGGCGGCGCuGGCGcUGGCg -3'
miRNA:   3'- uuCGCCGGCCGCCGCGuCCGCcAUCG- -5'
12434 3' -64.6 NC_003324.1 + 14591 1.08 0.000126
Target:  5'- cAAGCGGCCGGCGGCGCAGGCGGUAGCg -3'
miRNA:   3'- -UUCGCCGGCCGCCGCGUCCGCCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.