Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 30326 | 0.66 | 0.709788 |
Target: 5'- uCGCCgaugGUGuCGGCggugGCGUCGcucgGCGCGUg -3' miRNA: 3'- -GCGGa---CAC-GCUGg---UGCAGUa---CGUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 17795 | 0.66 | 0.709788 |
Target: 5'- uGCCg--GCGAUCugGUagCGUGCcucacgGCGCg -3' miRNA: 3'- gCGGacaCGCUGGugCA--GUACG------UGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 27192 | 0.66 | 0.699137 |
Target: 5'- aGCgaGaGCGACCGCGcuggUGUGCuGCGCc -3' miRNA: 3'- gCGgaCaCGCUGGUGCa---GUACG-UGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 49881 | 0.66 | 0.699137 |
Target: 5'- aGCCg--GCGggcaaagaucGCUGCGUCG-GCGCGCu -3' miRNA: 3'- gCGGacaCGC----------UGGUGCAGUaCGUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 27908 | 0.66 | 0.688423 |
Target: 5'- uCGUCgaaGCGGCCACGUgCGggGuCACGCu -3' miRNA: 3'- -GCGGacaCGCUGGUGCA-GUa-C-GUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 11842 | 0.66 | 0.677656 |
Target: 5'- uGuCCUGcGCGACCGgGcCggGCACGg -3' miRNA: 3'- gC-GGACaCGCUGGUgCaGuaCGUGCg -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 47723 | 0.66 | 0.677656 |
Target: 5'- uGCCacagcucgacgaUG-GCGGCCcggucgcCGUCAUGCGCGg -3' miRNA: 3'- gCGG------------ACaCGCUGGu------GCAGUACGUGCg -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 47667 | 0.66 | 0.666846 |
Target: 5'- aCGCCgGUGCG-CUGgacaguucCGUCG-GCGCGCu -3' miRNA: 3'- -GCGGaCACGCuGGU--------GCAGUaCGUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 24300 | 0.66 | 0.666846 |
Target: 5'- aGCUUG-GCGAagGCGUCGcGgACGCg -3' miRNA: 3'- gCGGACaCGCUggUGCAGUaCgUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 35373 | 0.67 | 0.638619 |
Target: 5'- gGCCUGUGCugcugcagccugcucGGCCGCc----GCGCGCa -3' miRNA: 3'- gCGGACACG---------------CUGGUGcaguaCGUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 54117 | 0.67 | 0.634269 |
Target: 5'- aGCCUcUGCGcGCCAauCGUCcgGCACu- -3' miRNA: 3'- gCGGAcACGC-UGGU--GCAGuaCGUGcg -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 45867 | 0.67 | 0.623392 |
Target: 5'- gCGCCUGaUGCGagGCCGugaUGuUCAUcggGCACGCu -3' miRNA: 3'- -GCGGAC-ACGC--UGGU---GC-AGUA---CGUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 14990 | 0.67 | 0.601672 |
Target: 5'- gGCaUGuUGuUGACCGCGUCGaGCGCGUc -3' miRNA: 3'- gCGgAC-AC-GCUGGUGCAGUaCGUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 52459 | 0.67 | 0.601672 |
Target: 5'- gGUCUuuccuucgaGUGCGACaaagcaCGCGUCcUGCGCGUg -3' miRNA: 3'- gCGGA---------CACGCUG------GUGCAGuACGUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 51368 | 0.68 | 0.589765 |
Target: 5'- aCGCCUGccgGCGGCUGauccuugcaaaacCGUCGUGUcUGCg -3' miRNA: 3'- -GCGGACa--CGCUGGU-------------GCAGUACGuGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 16530 | 0.68 | 0.580053 |
Target: 5'- gGCCUGUGCGugCucgGCGagAgggugagggGCugGCu -3' miRNA: 3'- gCGGACACGCugG---UGCagUa--------CGugCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 8578 | 0.68 | 0.569303 |
Target: 5'- gCGCgCUG-GCucacugccgagGACCGCGUCAcGgGCGCg -3' miRNA: 3'- -GCG-GACaCG-----------CUGGUGCAGUaCgUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 43475 | 0.68 | 0.569303 |
Target: 5'- aGCaacuUGCGGCCACGguUCAUGaUGCGCg -3' miRNA: 3'- gCGgac-ACGCUGGUGC--AGUAC-GUGCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 49195 | 0.68 | 0.558602 |
Target: 5'- cCGCCaucuUG-GCGAUCGCGUCAccgGCA-GCg -3' miRNA: 3'- -GCGG----ACaCGCUGGUGCAGUa--CGUgCG- -5' |
|||||||
12435 | 3' | -56.1 | NC_003324.1 | + | 44331 | 0.68 | 0.537381 |
Target: 5'- aGCCUcUGCaGCCACGgc--GCGCGCu -3' miRNA: 3'- gCGGAcACGcUGGUGCaguaCGUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home