miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12435 3' -56.1 NC_003324.1 + 30326 0.66 0.709788
Target:  5'- uCGCCgaugGUGuCGGCggugGCGUCGcucgGCGCGUg -3'
miRNA:   3'- -GCGGa---CAC-GCUGg---UGCAGUa---CGUGCG- -5'
12435 3' -56.1 NC_003324.1 + 17795 0.66 0.709788
Target:  5'- uGCCg--GCGAUCugGUagCGUGCcucacgGCGCg -3'
miRNA:   3'- gCGGacaCGCUGGugCA--GUACG------UGCG- -5'
12435 3' -56.1 NC_003324.1 + 27192 0.66 0.699137
Target:  5'- aGCgaGaGCGACCGCGcuggUGUGCuGCGCc -3'
miRNA:   3'- gCGgaCaCGCUGGUGCa---GUACG-UGCG- -5'
12435 3' -56.1 NC_003324.1 + 49881 0.66 0.699137
Target:  5'- aGCCg--GCGggcaaagaucGCUGCGUCG-GCGCGCu -3'
miRNA:   3'- gCGGacaCGC----------UGGUGCAGUaCGUGCG- -5'
12435 3' -56.1 NC_003324.1 + 27908 0.66 0.688423
Target:  5'- uCGUCgaaGCGGCCACGUgCGggGuCACGCu -3'
miRNA:   3'- -GCGGacaCGCUGGUGCA-GUa-C-GUGCG- -5'
12435 3' -56.1 NC_003324.1 + 11842 0.66 0.677656
Target:  5'- uGuCCUGcGCGACCGgGcCggGCACGg -3'
miRNA:   3'- gC-GGACaCGCUGGUgCaGuaCGUGCg -5'
12435 3' -56.1 NC_003324.1 + 47723 0.66 0.677656
Target:  5'- uGCCacagcucgacgaUG-GCGGCCcggucgcCGUCAUGCGCGg -3'
miRNA:   3'- gCGG------------ACaCGCUGGu------GCAGUACGUGCg -5'
12435 3' -56.1 NC_003324.1 + 47667 0.66 0.666846
Target:  5'- aCGCCgGUGCG-CUGgacaguucCGUCG-GCGCGCu -3'
miRNA:   3'- -GCGGaCACGCuGGU--------GCAGUaCGUGCG- -5'
12435 3' -56.1 NC_003324.1 + 24300 0.66 0.666846
Target:  5'- aGCUUG-GCGAagGCGUCGcGgACGCg -3'
miRNA:   3'- gCGGACaCGCUggUGCAGUaCgUGCG- -5'
12435 3' -56.1 NC_003324.1 + 35373 0.67 0.638619
Target:  5'- gGCCUGUGCugcugcagccugcucGGCCGCc----GCGCGCa -3'
miRNA:   3'- gCGGACACG---------------CUGGUGcaguaCGUGCG- -5'
12435 3' -56.1 NC_003324.1 + 54117 0.67 0.634269
Target:  5'- aGCCUcUGCGcGCCAauCGUCcgGCACu- -3'
miRNA:   3'- gCGGAcACGC-UGGU--GCAGuaCGUGcg -5'
12435 3' -56.1 NC_003324.1 + 45867 0.67 0.623392
Target:  5'- gCGCCUGaUGCGagGCCGugaUGuUCAUcggGCACGCu -3'
miRNA:   3'- -GCGGAC-ACGC--UGGU---GC-AGUA---CGUGCG- -5'
12435 3' -56.1 NC_003324.1 + 14990 0.67 0.601672
Target:  5'- gGCaUGuUGuUGACCGCGUCGaGCGCGUc -3'
miRNA:   3'- gCGgAC-AC-GCUGGUGCAGUaCGUGCG- -5'
12435 3' -56.1 NC_003324.1 + 52459 0.67 0.601672
Target:  5'- gGUCUuuccuucgaGUGCGACaaagcaCGCGUCcUGCGCGUg -3'
miRNA:   3'- gCGGA---------CACGCUG------GUGCAGuACGUGCG- -5'
12435 3' -56.1 NC_003324.1 + 51368 0.68 0.589765
Target:  5'- aCGCCUGccgGCGGCUGauccuugcaaaacCGUCGUGUcUGCg -3'
miRNA:   3'- -GCGGACa--CGCUGGU-------------GCAGUACGuGCG- -5'
12435 3' -56.1 NC_003324.1 + 16530 0.68 0.580053
Target:  5'- gGCCUGUGCGugCucgGCGagAgggugagggGCugGCu -3'
miRNA:   3'- gCGGACACGCugG---UGCagUa--------CGugCG- -5'
12435 3' -56.1 NC_003324.1 + 8578 0.68 0.569303
Target:  5'- gCGCgCUG-GCucacugccgagGACCGCGUCAcGgGCGCg -3'
miRNA:   3'- -GCG-GACaCG-----------CUGGUGCAGUaCgUGCG- -5'
12435 3' -56.1 NC_003324.1 + 43475 0.68 0.569303
Target:  5'- aGCaacuUGCGGCCACGguUCAUGaUGCGCg -3'
miRNA:   3'- gCGgac-ACGCUGGUGC--AGUAC-GUGCG- -5'
12435 3' -56.1 NC_003324.1 + 49195 0.68 0.558602
Target:  5'- cCGCCaucuUG-GCGAUCGCGUCAccgGCA-GCg -3'
miRNA:   3'- -GCGG----ACaCGCUGGUGCAGUa--CGUgCG- -5'
12435 3' -56.1 NC_003324.1 + 44331 0.68 0.537381
Target:  5'- aGCCUcUGCaGCCACGgc--GCGCGCu -3'
miRNA:   3'- gCGGAcACGcUGGUGCaguaCGUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.