miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12435 5' -57.5 NC_003324.1 + 50959 0.66 0.63922
Target:  5'- -gGGGUGuCAGuca-UGGUCACCACCu -3'
miRNA:   3'- agCCUACcGUCcuggACCAGUGGUGG- -5'
12435 5' -57.5 NC_003324.1 + 35035 0.66 0.628451
Target:  5'- gCGGcgGcaGCAGcGGCCUGaucgucGUCGCUGCCg -3'
miRNA:   3'- aGCCuaC--CGUC-CUGGAC------CAGUGGUGG- -5'
12435 5' -57.5 NC_003324.1 + 52328 0.66 0.628451
Target:  5'- uUCGGc-GGCAGGACgaaCUGGcCGagugauagcCCGCCg -3'
miRNA:   3'- -AGCCuaCCGUCCUG---GACCaGU---------GGUGG- -5'
12435 5' -57.5 NC_003324.1 + 8169 0.67 0.574822
Target:  5'- aCGGcgaccGUGGCA--GCCaUGGUCACCuCCu -3'
miRNA:   3'- aGCC-----UACCGUccUGG-ACCAGUGGuGG- -5'
12435 5' -57.5 NC_003324.1 + 34906 0.67 0.55363
Target:  5'- gUCGGccGGCAGGAUCcacGUUGCCGgCg -3'
miRNA:   3'- -AGCCuaCCGUCCUGGac-CAGUGGUgG- -5'
12435 5' -57.5 NC_003324.1 + 30110 0.67 0.55363
Target:  5'- gCGGcAUGGguGGugUUGGUgGCgCAgCa -3'
miRNA:   3'- aGCC-UACCguCCugGACCAgUG-GUgG- -5'
12435 5' -57.5 NC_003324.1 + 2777 0.67 0.532676
Target:  5'- aUCGcccGAucUGGCAGGucuaccGCCUGGUCACaagGCUg -3'
miRNA:   3'- -AGC---CU--ACCGUCC------UGGACCAGUGg--UGG- -5'
12435 5' -57.5 NC_003324.1 + 9397 0.68 0.501806
Target:  5'- uUCGGGUGGCAugcuugcuCUUGG-CACCACg -3'
miRNA:   3'- -AGCCUACCGUccu-----GGACCaGUGGUGg -5'
12435 5' -57.5 NC_003324.1 + 32816 0.68 0.501806
Target:  5'- uUCGGcgcAUGGCGGGcagccGCCUcGaUCAUCGCCa -3'
miRNA:   3'- -AGCC---UACCGUCC-----UGGAcC-AGUGGUGG- -5'
12435 5' -57.5 NC_003324.1 + 56644 0.69 0.433145
Target:  5'- uUCGGGUGGCGGccagaGACCUcaccucacGGUCACguUCc -3'
miRNA:   3'- -AGCCUACCGUC-----CUGGA--------CCAGUGguGG- -5'
12435 5' -57.5 NC_003324.1 + 39324 0.69 0.414546
Target:  5'- aUCGc---GCAGGACCgGGUUACCGCg -3'
miRNA:   3'- -AGCcuacCGUCCUGGaCCAGUGGUGg -5'
12435 5' -57.5 NC_003324.1 + 17548 0.7 0.405432
Target:  5'- cUCGGcgcgacGGCAGGACUUGGUgAgcagugguUCACCg -3'
miRNA:   3'- -AGCCua----CCGUCCUGGACCAgU--------GGUGG- -5'
12435 5' -57.5 NC_003324.1 + 56307 0.71 0.32156
Target:  5'- aCGGAU-GCAGGAU---GUCGCCGCCg -3'
miRNA:   3'- aGCCUAcCGUCCUGgacCAGUGGUGG- -5'
12435 5' -57.5 NC_003324.1 + 17307 1.13 0.000365
Target:  5'- aUCGGAUGGCAGGACCUGGUCACCACCg -3'
miRNA:   3'- -AGCCUACCGUCCUGGACCAGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.