miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12436 3' -55 NC_003324.1 + 42317 0.65 0.771758
Target:  5'- gUGCCGG-GCGcCGGUGACAGAcuuagagCGACu -3'
miRNA:   3'- -ACGGCUaCGC-GCUGCUGUCUa------GCUGu -5'
12436 3' -55 NC_003324.1 + 12192 0.65 0.771758
Target:  5'- gGCCGAggccGCGCGcuccGCGAuCAGGUacaGACc -3'
miRNA:   3'- aCGGCUa---CGCGC----UGCU-GUCUAg--CUGu -5'
12436 3' -55 NC_003324.1 + 17550 0.65 0.771758
Target:  5'- cGCUcg-GCGCGACGGCAGGacUUGGu- -3'
miRNA:   3'- aCGGcuaCGCGCUGCUGUCU--AGCUgu -5'
12436 3' -55 NC_003324.1 + 28734 0.65 0.771758
Target:  5'- aUGCCGAUG-GCaccACGAC-GcgCGACAa -3'
miRNA:   3'- -ACGGCUACgCGc--UGCUGuCuaGCUGU- -5'
12436 3' -55 NC_003324.1 + 18955 0.65 0.770752
Target:  5'- aGCCGugcgugaucUGCGgGACGACuucccaaauggcaAGAUCGAg- -3'
miRNA:   3'- aCGGCu--------ACGCgCUGCUG-------------UCUAGCUgu -5'
12436 3' -55 NC_003324.1 + 25847 0.66 0.761634
Target:  5'- aGCUGGaugcgGCGCGugGugGagcgaucgcGAUCGACc -3'
miRNA:   3'- aCGGCUa----CGCGCugCugU---------CUAGCUGu -5'
12436 3' -55 NC_003324.1 + 2522 0.66 0.761634
Target:  5'- aGCCG-UGaCGCcaccgacgaacaGGCGACGGA-CGGCAg -3'
miRNA:   3'- aCGGCuAC-GCG------------CUGCUGUCUaGCUGU- -5'
12436 3' -55 NC_003324.1 + 52093 0.66 0.761634
Target:  5'- cUGCCGuaagGaCGcCGACGAUuauuuugacgAGGUCGGCGa -3'
miRNA:   3'- -ACGGCua--C-GC-GCUGCUG----------UCUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 32276 0.66 0.761634
Target:  5'- gGCCucgaaGAUGcCGCGcACGACGcgcGUCGGCAa -3'
miRNA:   3'- aCGG-----CUAC-GCGC-UGCUGUc--UAGCUGU- -5'
12436 3' -55 NC_003324.1 + 39780 0.66 0.755495
Target:  5'- gGCCGGgcacaugGCGCGACGuGCGGcacaucaagcacgauGUCGAgGa -3'
miRNA:   3'- aCGGCUa------CGCGCUGC-UGUC---------------UAGCUgU- -5'
12436 3' -55 NC_003324.1 + 2507 0.66 0.741001
Target:  5'- aGCCGccgGCGuCGGCGGCuucaucAUCGGCGu -3'
miRNA:   3'- aCGGCua-CGC-GCUGCUGuc----UAGCUGU- -5'
12436 3' -55 NC_003324.1 + 42738 0.66 0.741001
Target:  5'- uUGuuGAaGCGUgGGCGcucucccaugcGCGGAUCGGCAa -3'
miRNA:   3'- -ACggCUaCGCG-CUGC-----------UGUCUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 24079 0.66 0.741001
Target:  5'- cGCCGGUGCGCuGCGcCAcGGU-GGCGc -3'
miRNA:   3'- aCGGCUACGCGcUGCuGU-CUAgCUGU- -5'
12436 3' -55 NC_003324.1 + 31250 0.66 0.730515
Target:  5'- cGCCGGccgcacUGCGCGuuuuuGCGGCGG--CGACGg -3'
miRNA:   3'- aCGGCU------ACGCGC-----UGCUGUCuaGCUGU- -5'
12436 3' -55 NC_003324.1 + 19389 0.66 0.730515
Target:  5'- cGCCGgcGCGCGuCGcGCcgugcaugAGGUCGGCu -3'
miRNA:   3'- aCGGCuaCGCGCuGC-UG--------UCUAGCUGu -5'
12436 3' -55 NC_003324.1 + 5050 0.66 0.729461
Target:  5'- cGCCGGa-UGCGACGACAGGUucguugcCGugAu -3'
miRNA:   3'- aCGGCUacGCGCUGCUGUCUA-------GCugU- -5'
12436 3' -55 NC_003324.1 + 47892 0.66 0.729461
Target:  5'- uUGCCGAaccgugUGCGcCGAUGGCcggcuuauccgcuGGGUCGAgAg -3'
miRNA:   3'- -ACGGCU------ACGC-GCUGCUG-------------UCUAGCUgU- -5'
12436 3' -55 NC_003324.1 + 13174 0.66 0.719931
Target:  5'- aGCgaGGcUGCGuCGGCGGCGG-UCGGCGg -3'
miRNA:   3'- aCGg-CU-ACGC-GCUGCUGUCuAGCUGU- -5'
12436 3' -55 NC_003324.1 + 35034 0.66 0.719931
Target:  5'- gGgCGAUGC-CGAUGAuCAGggCGGCGc -3'
miRNA:   3'- aCgGCUACGcGCUGCU-GUCuaGCUGU- -5'
12436 3' -55 NC_003324.1 + 32184 0.66 0.719931
Target:  5'- uUGCCGAcGCGCGuCGu--GcgCGGCAu -3'
miRNA:   3'- -ACGGCUaCGCGCuGCuguCuaGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.