miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12436 3' -55 NC_003324.1 + 17569 1.09 0.001259
Target:  5'- aUGCCGAUGCGCGACGACAGAUCGACAc -3'
miRNA:   3'- -ACGGCUACGCGCUGCUGUCUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 30142 0.75 0.282972
Target:  5'- gGCCGGUGuCGCGAcCGGCGGcgUGAUg -3'
miRNA:   3'- aCGGCUAC-GCGCU-GCUGUCuaGCUGu -5'
12436 3' -55 NC_003324.1 + 39994 0.74 0.320313
Target:  5'- cGCCGA-GCGUGGCGAgGGuGUUGGCGa -3'
miRNA:   3'- aCGGCUaCGCGCUGCUgUC-UAGCUGU- -5'
12436 3' -55 NC_003324.1 + 15008 0.73 0.344434
Target:  5'- aGCgCGAgacggGCaaagGCGACGGCAGGUCGAUc -3'
miRNA:   3'- aCG-GCUa----CG----CGCUGCUGUCUAGCUGu -5'
12436 3' -55 NC_003324.1 + 47668 0.73 0.344434
Target:  5'- cGCCGGUGCGCug-GACAGuuccGUCGGCGc -3'
miRNA:   3'- aCGGCUACGCGcugCUGUC----UAGCUGU- -5'
12436 3' -55 NC_003324.1 + 49019 0.73 0.351921
Target:  5'- cUGCCGAagaaGCGACGGCcuugaccAGGUCGACGa -3'
miRNA:   3'- -ACGGCUacg-CGCUGCUG-------UCUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 52671 0.73 0.369834
Target:  5'- cGCCGcAUGCGCGAgCGugGauGGUCGAUc -3'
miRNA:   3'- aCGGC-UACGCGCU-GCugU--CUAGCUGu -5'
12436 3' -55 NC_003324.1 + 36525 0.72 0.404718
Target:  5'- cGCCGcggGCGCGACGGCAugcccuacggcauGAUCcGCAa -3'
miRNA:   3'- aCGGCua-CGCGCUGCUGU-------------CUAGcUGU- -5'
12436 3' -55 NC_003324.1 + 18801 0.72 0.405639
Target:  5'- aUGCgCGGguccaugGCGCGGCGA-AGGUCGGCGc -3'
miRNA:   3'- -ACG-GCUa------CGCGCUGCUgUCUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 21474 0.72 0.405639
Target:  5'- cGCuCGAUGCGCGGacgUGGCAGAcgaUCGAg- -3'
miRNA:   3'- aCG-GCUACGCGCU---GCUGUCU---AGCUgu -5'
12436 3' -55 NC_003324.1 + 14497 0.71 0.453335
Target:  5'- aGCCGGUGCagccaacacuGCG-CGGCAGGgcguccgCGACAa -3'
miRNA:   3'- aCGGCUACG----------CGCuGCUGUCUa------GCUGU- -5'
12436 3' -55 NC_003324.1 + 47695 0.71 0.462241
Target:  5'- cGCCGucAUGCGCGGCGugguaaagcucggACGGAacuuccggcUCGACGg -3'
miRNA:   3'- aCGGC--UACGCGCUGC-------------UGUCU---------AGCUGU- -5'
12436 3' -55 NC_003324.1 + 16448 0.71 0.463237
Target:  5'- aUGCCGuuUGCGagcagguccugGACGACGcGAUCGACGg -3'
miRNA:   3'- -ACGGCu-ACGCg----------CUGCUGU-CUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 35657 0.71 0.470235
Target:  5'- aGCCGAUGCGCagaaGACGcaggcgcaggccuuGCAGAUCcGCu -3'
miRNA:   3'- aCGGCUACGCG----CUGC--------------UGUCUAGcUGu -5'
12436 3' -55 NC_003324.1 + 44896 0.71 0.473251
Target:  5'- cGCCGggGCGCGGgGGCuGGAuugcUCGAUg -3'
miRNA:   3'- aCGGCuaCGCGCUgCUG-UCU----AGCUGu -5'
12436 3' -55 NC_003324.1 + 1428 0.71 0.473251
Target:  5'- cGUCGAgcaGCGCGACGcaaaggaaACGGcgCGACGu -3'
miRNA:   3'- aCGGCUa--CGCGCUGC--------UGUCuaGCUGU- -5'
12436 3' -55 NC_003324.1 + 36276 0.7 0.497715
Target:  5'- aGCUGAUGuCGCGcaacaucaguaugcuGCaGCAGGUCGGCGg -3'
miRNA:   3'- aCGGCUAC-GCGC---------------UGcUGUCUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 52783 0.7 0.50392
Target:  5'- gUGCUGAUGgaCGCGAgGAUcgcgccGGAUCGACc -3'
miRNA:   3'- -ACGGCUAC--GCGCUgCUG------UCUAGCUGu -5'
12436 3' -55 NC_003324.1 + 11597 0.7 0.514335
Target:  5'- cUGCCGGagacugGUGCGACGGCAG--CGAUg -3'
miRNA:   3'- -ACGGCUa-----CGCGCUGCUGUCuaGCUGu -5'
12436 3' -55 NC_003324.1 + 13578 0.7 0.524837
Target:  5'- cGCCGu--CGCGAUGACAGAgaGGCGc -3'
miRNA:   3'- aCGGCuacGCGCUGCUGUCUagCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.