miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12436 3' -55 NC_003324.1 + 14596 0.67 0.709261
Target:  5'- gGCCGGcgGCGCaGGCGGUAGcgUGGCGg -3'
miRNA:   3'- aCGGCUa-CGCG-CUGCUGUCuaGCUGU- -5'
12436 3' -55 NC_003324.1 + 24829 0.67 0.698516
Target:  5'- gGCgGAU-CGCGcCGACAaGGUCGGCc -3'
miRNA:   3'- aCGgCUAcGCGCuGCUGU-CUAGCUGu -5'
12436 3' -55 NC_003324.1 + 28821 0.67 0.686622
Target:  5'- aUGCgGA-GCGCGGCGcgggaacugcagaGCAGGuuUCGGCGc -3'
miRNA:   3'- -ACGgCUaCGCGCUGC-------------UGUCU--AGCUGU- -5'
12436 3' -55 NC_003324.1 + 52668 0.67 0.676844
Target:  5'- aUGCCGAgaugaGCGuCGGCGAU--GUUGACGg -3'
miRNA:   3'- -ACGGCUa----CGC-GCUGCUGucUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 48683 0.67 0.676844
Target:  5'- cGCCGAccUGCGUGuCGAUugGGuUCGGCu -3'
miRNA:   3'- aCGGCU--ACGCGCuGCUG--UCuAGCUGu -5'
12436 3' -55 NC_003324.1 + 54034 0.67 0.673576
Target:  5'- gUGCCGGacgauugGCGCGcagaggcuuucgcuGCGGCGGaAUCGGCc -3'
miRNA:   3'- -ACGGCUa------CGCGC--------------UGCUGUC-UAGCUGu -5'
12436 3' -55 NC_003324.1 + 3270 0.67 0.665939
Target:  5'- aGCgGA-GgGCGGCGGCAaccGUCGGCAu -3'
miRNA:   3'- aCGgCUaCgCGCUGCUGUc--UAGCUGU- -5'
12436 3' -55 NC_003324.1 + 21129 0.67 0.665939
Target:  5'- uUGCCGGUGUgGUGAaggGAgAGAccuUCGACAa -3'
miRNA:   3'- -ACGGCUACG-CGCUg--CUgUCU---AGCUGU- -5'
12436 3' -55 NC_003324.1 + 29760 0.67 0.664847
Target:  5'- gUGCCGAucggcaaUGUGacgaaGACGGCGGAcUCGAUc -3'
miRNA:   3'- -ACGGCU-------ACGCg----CUGCUGUCU-AGCUGu -5'
12436 3' -55 NC_003324.1 + 49109 0.68 0.655003
Target:  5'- cUGCCGGUGaCGCGAucgccaagaUGGCGGGccgcUCGAUu -3'
miRNA:   3'- -ACGGCUAC-GCGCU---------GCUGUCU----AGCUGu -5'
12436 3' -55 NC_003324.1 + 42213 0.68 0.644046
Target:  5'- uUGCUGAUcccCGCGGCGGCAuuggCGACGa -3'
miRNA:   3'- -ACGGCUAc--GCGCUGCUGUcua-GCUGU- -5'
12436 3' -55 NC_003324.1 + 19626 0.68 0.644046
Target:  5'- cGCCGucggcgaguauAUGCGCGugaaGCGGCuGAUgGACGc -3'
miRNA:   3'- aCGGC-----------UACGCGC----UGCUGuCUAgCUGU- -5'
12436 3' -55 NC_003324.1 + 31555 0.68 0.644046
Target:  5'- cGCCGucccaacaGCGACGGCAGcuauUCGACc -3'
miRNA:   3'- aCGGCuacg----CGCUGCUGUCu---AGCUGu -5'
12436 3' -55 NC_003324.1 + 37245 0.68 0.633079
Target:  5'- cUGCCGcgGCGCaaggaaGACGACAagcCGGCGg -3'
miRNA:   3'- -ACGGCuaCGCG------CUGCUGUcuaGCUGU- -5'
12436 3' -55 NC_003324.1 + 43070 0.68 0.611151
Target:  5'- uUGCCGAcccGCGUGAauuUGGCGGGUUGAgAa -3'
miRNA:   3'- -ACGGCUa--CGCGCU---GCUGUCUAGCUgU- -5'
12436 3' -55 NC_003324.1 + 37883 0.68 0.611151
Target:  5'- gGCUGAucccuUGCGUGAucaCGAUAGAUCGcGCGu -3'
miRNA:   3'- aCGGCU-----ACGCGCU---GCUGUCUAGC-UGU- -5'
12436 3' -55 NC_003324.1 + 21928 0.68 0.608961
Target:  5'- cGCCGAggaggcccggcUGCGCGAacugaugcagaaGGCGGA-CGACGg -3'
miRNA:   3'- aCGGCU-----------ACGCGCUg-----------CUGUCUaGCUGU- -5'
12436 3' -55 NC_003324.1 + 15666 0.68 0.600209
Target:  5'- cGCuCGAUGaCGCGAUcaaGGCGGGccagCGACAg -3'
miRNA:   3'- aCG-GCUAC-GCGCUG---CUGUCUa---GCUGU- -5'
12436 3' -55 NC_003324.1 + 12893 0.69 0.589294
Target:  5'- cGUCGAUGgGCG-CGGuguuGGUCGACAg -3'
miRNA:   3'- aCGGCUACgCGCuGCUgu--CUAGCUGU- -5'
12436 3' -55 NC_003324.1 + 5646 0.69 0.578416
Target:  5'- gGCCGAUGacgccCGCGGCGAaGGuugCGGCGg -3'
miRNA:   3'- aCGGCUAC-----GCGCUGCUgUCua-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.