miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12437 5' -53.6 NC_003324.1 + 51051 0.66 0.85516
Target:  5'- gGGuUGGAAC-UCCACGAGGcagacGACgUCu -3'
miRNA:   3'- gCC-ACCUUGuAGGUGCUCUa----CUGgGG- -5'
12437 5' -53.6 NC_003324.1 + 41583 0.66 0.8467
Target:  5'- aGGUGGc-CGUCCcucgcuCGGGAaaGCCCCu -3'
miRNA:   3'- gCCACCuuGUAGGu-----GCUCUacUGGGG- -5'
12437 5' -53.6 NC_003324.1 + 53830 0.67 0.791567
Target:  5'- uGGUGGuuuCAgCCAUGAGcgGcCUCCg -3'
miRNA:   3'- gCCACCuu-GUaGGUGCUCuaCuGGGG- -5'
12437 5' -53.6 NC_003324.1 + 40705 0.67 0.78174
Target:  5'- aGGaGGAucGCccugAUCCgGCG-GAUGGCCCCa -3'
miRNA:   3'- gCCaCCU--UG----UAGG-UGCuCUACUGGGG- -5'
12437 5' -53.6 NC_003324.1 + 25863 0.67 0.761634
Target:  5'- uGGUGGAGCGaUCGCGAuc-GACCUUg -3'
miRNA:   3'- gCCACCUUGUaGGUGCUcuaCUGGGG- -5'
12437 5' -53.6 NC_003324.1 + 10147 0.68 0.751378
Target:  5'- ---cGGAACAaaUCCGCGAGAcaaugcccGACCUCu -3'
miRNA:   3'- gccaCCUUGU--AGGUGCUCUa-------CUGGGG- -5'
12437 5' -53.6 NC_003324.1 + 10804 0.68 0.730515
Target:  5'- uGGUGGuGGC-UgCACGAG-UGACgCCCa -3'
miRNA:   3'- gCCACC-UUGuAgGUGCUCuACUG-GGG- -5'
12437 5' -53.6 NC_003324.1 + 35540 0.69 0.698516
Target:  5'- uGGUGGcuGugAUCUGCGAGcgGAUCUg -3'
miRNA:   3'- gCCACC--UugUAGGUGCUCuaCUGGGg -5'
12437 5' -53.6 NC_003324.1 + 36397 0.69 0.676844
Target:  5'- gCGGUGGAagACAUCaACGAGcUGGCggaagaaaucgCCCg -3'
miRNA:   3'- -GCCACCU--UGUAGgUGCUCuACUG-----------GGG- -5'
12437 5' -53.6 NC_003324.1 + 44541 0.69 0.675755
Target:  5'- aCGGUGGuACggCuCGCaGAuugugguGAUGACCCCg -3'
miRNA:   3'- -GCCACCuUGuaG-GUG-CU-------CUACUGGGG- -5'
12437 5' -53.6 NC_003324.1 + 22037 0.7 0.600209
Target:  5'- aGGUGcaucgcGCcgCCgACGAGAUGGCCCg -3'
miRNA:   3'- gCCACcu----UGuaGG-UGCUCUACUGGGg -5'
12437 5' -53.6 NC_003324.1 + 5668 0.7 0.599116
Target:  5'- uCGGUGGaAACGaUCACGGucaggccGAUGACgCCCg -3'
miRNA:   3'- -GCCACC-UUGUaGGUGCU-------CUACUG-GGG- -5'
12437 5' -53.6 NC_003324.1 + 41516 0.73 0.424341
Target:  5'- uCGGUuuGGGACcUCUACGAGGgcugGGCCCa -3'
miRNA:   3'- -GCCA--CCUUGuAGGUGCUCUa---CUGGGg -5'
12437 5' -53.6 NC_003324.1 + 18089 1.11 0.001259
Target:  5'- gCGGUGGAACAUCCACGAGAUGACCCCc -3'
miRNA:   3'- -GCCACCUUGUAGGUGCUCUACUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.