miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12439 3' -58.5 NC_003324.1 + 6275 0.7 0.317122
Target:  5'- -----aGGCGaGCgagauCAUGCGGCUGGCc -3'
miRNA:   3'- uuuaugCCGC-CGac---GUGCGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 19977 0.7 0.309469
Target:  5'- ---cACGGCGGCga-AU-CGGCUGGCu -3'
miRNA:   3'- uuuaUGCCGCCGacgUGcGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 27853 0.7 0.309469
Target:  5'- gAGGUA-GGCGGC-GCGCGCuucguccucGCUGGCg -3'
miRNA:   3'- -UUUAUgCCGCCGaCGUGCGc--------CGACCG- -5'
12439 3' -58.5 NC_003324.1 + 22692 0.7 0.280272
Target:  5'- ---cGCGG-GGCUcgGCaACGCGGCaGGCa -3'
miRNA:   3'- uuuaUGCCgCCGA--CG-UGCGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 4734 0.7 0.280272
Target:  5'- -----aGGCGGCUGCuACGgCGGaaGGCc -3'
miRNA:   3'- uuuaugCCGCCGACG-UGC-GCCgaCCG- -5'
12439 3' -58.5 NC_003324.1 + 21092 0.7 0.280272
Target:  5'- ---cGCGGCGcguGCUGCgucggcuuccACGUcgGGCUGGCg -3'
miRNA:   3'- uuuaUGCCGC---CGACG----------UGCG--CCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 53196 0.7 0.280272
Target:  5'- -----gGGUGGUaGCugGCGGCcGGCu -3'
miRNA:   3'- uuuaugCCGCCGaCGugCGCCGaCCG- -5'
12439 3' -58.5 NC_003324.1 + 39803 0.7 0.280272
Target:  5'- -cAUGUGGUGGCUGCAgaacCGCaGGCcgGGCa -3'
miRNA:   3'- uuUAUGCCGCCGACGU----GCG-CCGa-CCG- -5'
12439 3' -58.5 NC_003324.1 + 13150 0.71 0.266514
Target:  5'- ---gGCGGCGGCgGUAC-CGGCUG-Ca -3'
miRNA:   3'- uuuaUGCCGCCGaCGUGcGCCGACcG- -5'
12439 3' -58.5 NC_003324.1 + 12989 0.71 0.246908
Target:  5'- ---cGCuGC-GCUGUuCGCGGCUGGCg -3'
miRNA:   3'- uuuaUGcCGcCGACGuGCGCCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 14598 0.72 0.205799
Target:  5'- ----cCGGCGGC-GCAgGCGGUagcgUGGCg -3'
miRNA:   3'- uuuauGCCGCCGaCGUgCGCCG----ACCG- -5'
12439 3' -58.5 NC_003324.1 + 29887 0.75 0.141131
Target:  5'- uGGAUACGGCGcGaucuucgGCGCGCuGCUGGCc -3'
miRNA:   3'- -UUUAUGCCGC-Cga-----CGUGCGcCGACCG- -5'
12439 3' -58.5 NC_003324.1 + 1523 0.75 0.133575
Target:  5'- aGGAUcCGGCGGCagugGUGCGCGGCgcuaUGGCc -3'
miRNA:   3'- -UUUAuGCCGCCGa---CGUGCGCCG----ACCG- -5'
12439 3' -58.5 NC_003324.1 + 30312 0.76 0.122937
Target:  5'- ---gGCGGUGGCgucGCucgGCGCGuGCUGGCu -3'
miRNA:   3'- uuuaUGCCGCCGa--CG---UGCGC-CGACCG- -5'
12439 3' -58.5 NC_003324.1 + 31320 0.76 0.113091
Target:  5'- cAGUGCGGcCGGCggcGCugGCG-CUGGCg -3'
miRNA:   3'- uUUAUGCC-GCCGa--CGugCGCcGACCG- -5'
12439 3' -58.5 NC_003324.1 + 18997 1.08 0.000483
Target:  5'- gAAAUACGGCGGCUGCACGCGGCUGGCc -3'
miRNA:   3'- -UUUAUGCCGCCGACGUGCGCCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.