miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12439 5' -57.8 NC_003324.1 + 26102 0.66 0.52739
Target:  5'- gGUGaCGCcauuGGCGCGcUCAgucaccccgaagUCGGGCCUa -3'
miRNA:   3'- -UAC-GCGu---CCGCGC-AGUa-----------AGCUCGGAa -5'
12439 5' -57.8 NC_003324.1 + 25886 0.66 0.507273
Target:  5'- -cGCGCAGGCGUG-CGUcUCGAcuaugacgguaccGCCa- -3'
miRNA:   3'- uaCGCGUCCGCGCaGUA-AGCU-------------CGGaa -5'
12439 5' -57.8 NC_003324.1 + 5484 0.66 0.497857
Target:  5'- -gGUGCGGGCGCcaUCuucCGAGCCg- -3'
miRNA:   3'- uaCGCGUCCGCGc-AGuaaGCUCGGaa -5'
12439 5' -57.8 NC_003324.1 + 17180 0.66 0.487489
Target:  5'- -gGCGCuGGCGCGUCugUCGgacgcGGCUUUc -3'
miRNA:   3'- uaCGCGuCCGCGCAGuaAGC-----UCGGAA- -5'
12439 5' -57.8 NC_003324.1 + 54205 0.67 0.447093
Target:  5'- aAUGCGCAGGCGCcaacuuUUCGAGgUUg -3'
miRNA:   3'- -UACGCGUCCGCGcagu--AAGCUCgGAa -5'
12439 5' -57.8 NC_003324.1 + 18127 0.67 0.427604
Target:  5'- -cGCGCAgcGGCGUG-UAUUCGAcGCCg- -3'
miRNA:   3'- uaCGCGU--CCGCGCaGUAAGCU-CGGaa -5'
12439 5' -57.8 NC_003324.1 + 16314 0.68 0.41805
Target:  5'- cUGCGCuGGcCGCGUCGgcaCG-GCCUg -3'
miRNA:   3'- uACGCGuCC-GCGCAGUaa-GCuCGGAa -5'
12439 5' -57.8 NC_003324.1 + 8457 0.7 0.2842
Target:  5'- -gGCGCAuGCGCGUCAaUCGAGaCUa -3'
miRNA:   3'- uaCGCGUcCGCGCAGUaAGCUCgGAa -5'
12439 5' -57.8 NC_003324.1 + 23366 0.71 0.277064
Target:  5'- cUGCGCAgcuaugacGGCGCG-CAUcUGAGCCUUc -3'
miRNA:   3'- uACGCGU--------CCGCGCaGUAaGCUCGGAA- -5'
12439 5' -57.8 NC_003324.1 + 19033 1.03 0.001196
Target:  5'- gAUGCGCAGGCGCGUCAUUCGAGCCUUu -3'
miRNA:   3'- -UACGCGUCCGCGCAGUAAGCUCGGAA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.