miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12440 5' -48.9 NC_003324.1 + 21085 0.66 0.97305
Target:  5'- cGGCc--GCCGcGGCGCGUGcUGcgUCGg -3'
miRNA:   3'- -CCGuuuCGGCuCUGCGCAC-AUaaAGU- -5'
12440 5' -48.9 NC_003324.1 + 17259 0.66 0.969886
Target:  5'- aGGCGugAAGCCGAG-CGCcUGUGc---- -3'
miRNA:   3'- -CCGU--UUCGGCUCuGCGcACAUaaagu -5'
12440 5' -48.9 NC_003324.1 + 12087 0.66 0.96278
Target:  5'- aGCAAAGCCGgAGA-GCGUGaccgUCu -3'
miRNA:   3'- cCGUUUCGGC-UCUgCGCACauaaAGu -5'
12440 5' -48.9 NC_003324.1 + 44077 0.67 0.950059
Target:  5'- cGGCGGcAGCCGAGGaggaaugaGCGaUGaAUUUCGc -3'
miRNA:   3'- -CCGUU-UCGGCUCUg-------CGC-ACaUAAAGU- -5'
12440 5' -48.9 NC_003324.1 + 27685 0.68 0.934727
Target:  5'- cGGUAAAGCCG-GACGCGc-------- -3'
miRNA:   3'- -CCGUUUCGGCuCUGCGCacauaaagu -5'
12440 5' -48.9 NC_003324.1 + 48702 0.68 0.910097
Target:  5'- cGGCGGAGCCG-GAUGCGg-------- -3'
miRNA:   3'- -CCGUUUCGGCuCUGCGCacauaaagu -5'
12440 5' -48.9 NC_003324.1 + 29182 0.69 0.888509
Target:  5'- gGGCGAGGUCguaGAGAUGCGcGUGcUUCu -3'
miRNA:   3'- -CCGUUUCGG---CUCUGCGCaCAUaAAGu -5'
12440 5' -48.9 NC_003324.1 + 32171 0.7 0.855786
Target:  5'- cGGCGacGAGCCGAGGCGCa--------- -3'
miRNA:   3'- -CCGU--UUCGGCUCUGCGcacauaaagu -5'
12440 5' -48.9 NC_003324.1 + 12415 0.7 0.850514
Target:  5'- cGGCAaugccgacaaugucgGAGCCGAcguuGCGCGaGUAUUUCu -3'
miRNA:   3'- -CCGU---------------UUCGGCUc---UGCGCaCAUAAAGu -5'
12440 5' -48.9 NC_003324.1 + 34150 0.71 0.809252
Target:  5'- gGGCGGAGCCGcuggcauuGGGCGcCGUGgGUaUCAu -3'
miRNA:   3'- -CCGUUUCGGC--------UCUGC-GCACaUAaAGU- -5'
12440 5' -48.9 NC_003324.1 + 19452 1.13 0.002763
Target:  5'- cGGCAAAGCCGAGACGCGUGUAUUUCAa -3'
miRNA:   3'- -CCGUUUCGGCUCUGCGCACAUAAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.