miRNA display CGI


Results 1 - 3 of 3 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12441 3' -54.1 NC_003324.1 + 39999 0.67 0.758162
Target:  5'- aGCGuGGCGaGGGUGUUGgCGAUcgUGAuguuGCGa -3'
miRNA:   3'- -CGCcUCGC-CCUACAAC-GCUA--ACU----CGC- -5'
12441 3' -54.1 NC_003324.1 + 48970 0.74 0.348007
Target:  5'- gGCGGAguccuggauGCGGGcgaaGgcGCGAUUGAGCGc -3'
miRNA:   3'- -CGCCU---------CGCCCua--CaaCGCUAACUCGC- -5'
12441 3' -54.1 NC_003324.1 + 20489 1.12 0.000914
Target:  5'- cGCGGAGCGGGAUGUUGCGAUUGAGCGa -3'
miRNA:   3'- -CGCCUCGCCCUACAACGCUAACUCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.