miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12441 5' -59.7 NC_003324.1 + 19411 0.66 0.532258
Target:  5'- gUCGCCGuucuauaaggggcuCCGCGAGCGCUaCAU-GGCu -3'
miRNA:   3'- gGGCGGCu-------------GGCGUUCGCGG-GUAgUCG- -5'
12441 5' -59.7 NC_003324.1 + 8326 0.66 0.528173
Target:  5'- gCCGUCGGCgcuCGUuacGGUGaCCGUCGGCg -3'
miRNA:   3'- gGGCGGCUG---GCGu--UCGCgGGUAGUCG- -5'
12441 5' -59.7 NC_003324.1 + 18326 0.66 0.528173
Target:  5'- aCCGCC-AaaGCGGGCGCCgAggaUUGGCa -3'
miRNA:   3'- gGGCGGcUggCGUUCGCGGgU---AGUCG- -5'
12441 5' -59.7 NC_003324.1 + 28638 0.66 0.528173
Target:  5'- gUUGCgGGCCGCcuugucGCGCgucguggugCCAUCGGCa -3'
miRNA:   3'- gGGCGgCUGGCGuu----CGCG---------GGUAGUCG- -5'
12441 5' -59.7 NC_003324.1 + 25448 0.66 0.527154
Target:  5'- cCCCaGCCGACCcacuugGCGAGCaugcuuuGCUCGUCccgggucgccgGGCg -3'
miRNA:   3'- -GGG-CGGCUGG------CGUUCG-------CGGGUAG-----------UCG- -5'
12441 5' -59.7 NC_003324.1 + 53899 0.66 0.518012
Target:  5'- -gCGCCccGCCGCAAGa--UCAUCAGCg -3'
miRNA:   3'- ggGCGGc-UGGCGUUCgcgGGUAGUCG- -5'
12441 5' -59.7 NC_003324.1 + 43396 0.66 0.518012
Target:  5'- aCCGCCGAucugaCCGCAgucgugGGUGgUC-UCGGCg -3'
miRNA:   3'- gGGCGGCU-----GGCGU------UCGCgGGuAGUCG- -5'
12441 5' -59.7 NC_003324.1 + 42235 0.66 0.518012
Target:  5'- gCCCGCCGGuCUGauAGUGCUCA-CGGUu -3'
miRNA:   3'- -GGGCGGCU-GGCguUCGCGGGUaGUCG- -5'
12441 5' -59.7 NC_003324.1 + 50084 0.66 0.518012
Target:  5'- gCuuGCCGAUCuuGUggGCGgcgaucauugccCCCAUCAGg -3'
miRNA:   3'- -GggCGGCUGG--CGuuCGC------------GGGUAGUCg -5'
12441 5' -59.7 NC_003324.1 + 57326 0.66 0.518012
Target:  5'- --gGCUGGCCGCuuGCGaCCC-UUGGCg -3'
miRNA:   3'- gggCGGCUGGCGuuCGC-GGGuAGUCG- -5'
12441 5' -59.7 NC_003324.1 + 17702 0.66 0.518012
Target:  5'- gCCCGagcuCGGCgGCAucGUGCUCAaCGGCg -3'
miRNA:   3'- -GGGCg---GCUGgCGUu-CGCGGGUaGUCG- -5'
12441 5' -59.7 NC_003324.1 + 1091 0.66 0.517
Target:  5'- aCCGCuuCGACgGCAAGgagaagaCGCUuguCAUCGGCa -3'
miRNA:   3'- gGGCG--GCUGgCGUUC-------GCGG---GUAGUCG- -5'
12441 5' -59.7 NC_003324.1 + 26288 0.66 0.515989
Target:  5'- gCUGCCGAgcgaggggacgaCGCAGacGCaGCCCcgCAGCg -3'
miRNA:   3'- gGGCGGCUg-----------GCGUU--CG-CGGGuaGUCG- -5'
12441 5' -59.7 NC_003324.1 + 25948 0.66 0.50793
Target:  5'- gCCUcaagGUCGAUCGCGAucgcuccaccacGCGCCgCAUcCAGCu -3'
miRNA:   3'- -GGG----CGGCUGGCGUU------------CGCGG-GUA-GUCG- -5'
12441 5' -59.7 NC_003324.1 + 29307 0.66 0.50793
Target:  5'- nCCGCCGuCUugGUGAGCGCaCCGUaguGCu -3'
miRNA:   3'- gGGCGGCuGG--CGUUCGCG-GGUAgu-CG- -5'
12441 5' -59.7 NC_003324.1 + 14432 0.66 0.50793
Target:  5'- -aCGcCCGGCUcu-GGCGCCCAUgcCGGCg -3'
miRNA:   3'- ggGC-GGCUGGcguUCGCGGGUA--GUCG- -5'
12441 5' -59.7 NC_003324.1 + 37153 0.66 0.50793
Target:  5'- cCCCGCCGGCuuguCGUcuuccuuGCGCCg--CGGCa -3'
miRNA:   3'- -GGGCGGCUG----GCGuu-----CGCGGguaGUCG- -5'
12441 5' -59.7 NC_003324.1 + 50006 0.66 0.50793
Target:  5'- gCCGCCcacaaGAUCgGCAAGCGCUgGggccgcugaUCGGCu -3'
miRNA:   3'- gGGCGG-----CUGG-CGUUCGCGGgU---------AGUCG- -5'
12441 5' -59.7 NC_003324.1 + 48365 0.66 0.50793
Target:  5'- cUCCaaGCCGGCuuCGCAguugcccuuGGCGCCUAccugcUCGGCu -3'
miRNA:   3'- -GGG--CGGCUG--GCGU---------UCGCGGGU-----AGUCG- -5'
12441 5' -59.7 NC_003324.1 + 35389 0.66 0.504922
Target:  5'- gCCUGCuCGGCCGCc-GCGCgCAugguuuccucgcccUCGGUg -3'
miRNA:   3'- -GGGCG-GCUGGCGuuCGCGgGU--------------AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.