miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12442 3' -55.5 NC_003324.1 + 7850 0.66 0.774024
Target:  5'- gCCCGUUGCGaucGCgccucccugCGAGGcgugcucUCGGACa -3'
miRNA:   3'- -GGGCAGCGCaa-CGa--------GUUCC-------AGCCUGc -5'
12442 3' -55.5 NC_003324.1 + 36695 0.67 0.70337
Target:  5'- aCCCGcuaUCGCGcggGCaCAAGGUCGcGAuCGa -3'
miRNA:   3'- -GGGC---AGCGCaa-CGaGUUCCAGC-CU-GC- -5'
12442 3' -55.5 NC_003324.1 + 21918 0.68 0.649984
Target:  5'- gCCCGgcugCGCGaacugaUGCagAAGG-CGGACGa -3'
miRNA:   3'- -GGGCa---GCGCa-----ACGagUUCCaGCCUGC- -5'
12442 3' -55.5 NC_003324.1 + 53184 0.7 0.501806
Target:  5'- aCCGUCugGCcgUGCUCAAGGagCGGACc -3'
miRNA:   3'- gGGCAG--CGcaACGAGUUCCa-GCCUGc -5'
12442 3' -55.5 NC_003324.1 + 21502 1.11 0.000879
Target:  5'- gCCCGUCGCGUUGCUCAAGGUCGGACGg -3'
miRNA:   3'- -GGGCAGCGCAACGAGUUCCAGCCUGC- -5'
12442 3' -55.5 NC_003324.1 + 55025 0.68 0.649984
Target:  5'- -gUGUCGCGccggGCaggCAAGG-CGGACGg -3'
miRNA:   3'- ggGCAGCGCaa--CGa--GUUCCaGCCUGC- -5'
12442 3' -55.5 NC_003324.1 + 19396 0.66 0.734685
Target:  5'- gCgCGUCGCGccgUGCaUGAGGUCGG-Cu -3'
miRNA:   3'- -GgGCAGCGCa--ACGaGUUCCAGCCuGc -5'
12442 3' -55.5 NC_003324.1 + 10065 0.66 0.754077
Target:  5'- aCCCGUgGCGUUGCUgGcuuGGUCcaugcuuGGcucGCGg -3'
miRNA:   3'- -GGGCAgCGCAACGAgUu--CCAG-------CC---UGC- -5'
12442 3' -55.5 NC_003324.1 + 18689 0.66 0.775007
Target:  5'- -gCGcUUGCG-UGCggaAAGGUCGGGCa -3'
miRNA:   3'- ggGC-AGCGCaACGag-UUCCAGCCUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.