miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12442 5' -53.5 NC_003324.1 + 43409 0.66 0.832778
Target:  5'- cCGCAgUCGuggGUGGUcuCGGCGaCGGCGAa -3'
miRNA:   3'- -GCGU-AGCua-CACUAc-GUCGC-GCUGCU- -5'
12442 5' -53.5 NC_003324.1 + 5447 0.66 0.804796
Target:  5'- cCGCAUCGAcGcUGGgucagGCAG-GCGGCGu -3'
miRNA:   3'- -GCGUAGCUaC-ACUa----CGUCgCGCUGCu -5'
12442 5' -53.5 NC_003324.1 + 28839 0.67 0.775162
Target:  5'- aGCugGUCGcgGUcagaGAUGCggAGCGCGGCGc -3'
miRNA:   3'- gCG--UAGCuaCA----CUACG--UCGCGCUGCu -5'
12442 5' -53.5 NC_003324.1 + 41034 0.67 0.748374
Target:  5'- uCGCuguUCGAgUGUGAgccggcgauagccuUGCAGCGCGucaccgugauagcgGCGAu -3'
miRNA:   3'- -GCGu--AGCU-ACACU--------------ACGUCGCGC--------------UGCU- -5'
12442 5' -53.5 NC_003324.1 + 30149 0.68 0.733601
Target:  5'- cCGCAgcggcCGGUGUcgcGAccgGCGGCGUGAUGGg -3'
miRNA:   3'- -GCGUa----GCUACA---CUa--CGUCGCGCUGCU- -5'
12442 5' -53.5 NC_003324.1 + 16240 0.68 0.712152
Target:  5'- cCGCcUCGGUGccagcGAUGCcuGGCGCGGCc- -3'
miRNA:   3'- -GCGuAGCUACa----CUACG--UCGCGCUGcu -5'
12442 5' -53.5 NC_003324.1 + 13428 0.69 0.646252
Target:  5'- gCGCGUCGcAUGUuuGGUcCGGCGCGGCu- -3'
miRNA:   3'- -GCGUAGC-UACA--CUAcGUCGCGCUGcu -5'
12442 5' -53.5 NC_003324.1 + 34423 0.7 0.601905
Target:  5'- gGCAUCG--GUGAUGuCGGC-CGACGGc -3'
miRNA:   3'- gCGUAGCuaCACUAC-GUCGcGCUGCU- -5'
12442 5' -53.5 NC_003324.1 + 44828 0.7 0.59086
Target:  5'- aCGCAuccUCGGUGUGuccGUcucuGGCGCGugGGg -3'
miRNA:   3'- -GCGU---AGCUACACua-CG----UCGCGCugCU- -5'
12442 5' -53.5 NC_003324.1 + 23769 0.72 0.483663
Target:  5'- uCGaCAUCGAUGUGAaGCccGGCGCGcCGu -3'
miRNA:   3'- -GC-GUAGCUACACUaCG--UCGCGCuGCu -5'
12442 5' -53.5 NC_003324.1 + 21538 1.1 0.001492
Target:  5'- gCGCAUCGAUGUGAUGCAGCGCGACGAg -3'
miRNA:   3'- -GCGUAGCUACACUACGUCGCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.