miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12443 3' -60.6 NC_003324.1 + 44585 0.66 0.46067
Target:  5'- cAUGCGcGuGCCGUC-CGaUCGGgaaaugagggucCGGCGCa -3'
miRNA:   3'- cUACGC-C-CGGUAGaGC-AGCC------------GCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 46008 0.66 0.454944
Target:  5'- -cUGCGGcGUCG-CUUGcuucgcuuccgaagCGGCGGCGCc -3'
miRNA:   3'- cuACGCC-CGGUaGAGCa-------------GCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 29266 0.66 0.451148
Target:  5'- --cGcCGGGCUcgcgCUCGaUCGGCGGauuGCg -3'
miRNA:   3'- cuaC-GCCCGGua--GAGC-AGCCGCCg--CG- -5'
12443 3' -60.6 NC_003324.1 + 45872 0.66 0.429666
Target:  5'- uGAUGCGaGGCCGUgaugUUCaUCGGgcacgcuccucauuCGGCGCc -3'
miRNA:   3'- -CUACGC-CCGGUA----GAGcAGCC--------------GCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 43416 0.66 0.423248
Target:  5'- --cGUGGGUgGUCUCGgCGaCGGCGa -3'
miRNA:   3'- cuaCGCCCGgUAGAGCaGCcGCCGCg -5'
12443 3' -60.6 NC_003324.1 + 14576 0.67 0.41418
Target:  5'- --cGCGGccuGCCggCgcaagCGgcCGGCGGCGCa -3'
miRNA:   3'- cuaCGCC---CGGuaGa----GCa-GCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 22069 0.67 0.396408
Target:  5'- cGAUGCGGGCUAUggCGacuaugcCGGCuccaaGGUGCa -3'
miRNA:   3'- -CUACGCCCGGUAgaGCa------GCCG-----CCGCG- -5'
12443 3' -60.6 NC_003324.1 + 47023 0.67 0.387708
Target:  5'- --aGC-GGCUAUCUCGUCgauugaGGCGGuUGCc -3'
miRNA:   3'- cuaCGcCCGGUAGAGCAG------CCGCC-GCG- -5'
12443 3' -60.6 NC_003324.1 + 27257 0.67 0.379135
Target:  5'- aGAUaGC-GGCCGaacacggcuUCcgCGUUGGUGGCGCg -3'
miRNA:   3'- -CUA-CGcCCGGU---------AGa-GCAGCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 31975 0.68 0.362374
Target:  5'- --aGCGGGCucgaCAUCUUGUCcGGa-GCGCg -3'
miRNA:   3'- cuaCGCCCG----GUAGAGCAG-CCgcCGCG- -5'
12443 3' -60.6 NC_003324.1 + 4368 0.68 0.354188
Target:  5'- -uUGCGGGaCAUCUUGccacCGGCggaaacgccguGGCGCa -3'
miRNA:   3'- cuACGCCCgGUAGAGCa---GCCG-----------CCGCG- -5'
12443 3' -60.6 NC_003324.1 + 6214 0.68 0.354188
Target:  5'- --cGCGGGUCAgUC-CGcuaUCGGCguaGGCGCg -3'
miRNA:   3'- cuaCGCCCGGU-AGaGC---AGCCG---CCGCG- -5'
12443 3' -60.6 NC_003324.1 + 8175 0.68 0.354188
Target:  5'- ----aGGGCCAgucccugCUCacugccCGGCGGCGCg -3'
miRNA:   3'- cuacgCCCGGUa------GAGca----GCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 17988 0.68 0.346134
Target:  5'- aGAUcGUGGGCCGUgUCGaucgcuUCGGauaccgauuggcCGGCGCc -3'
miRNA:   3'- -CUA-CGCCCGGUAgAGC------AGCC------------GCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 14971 0.68 0.346134
Target:  5'- --gGCGGG-CAUCaCGUCGGCaccuauGCGCa -3'
miRNA:   3'- cuaCGCCCgGUAGaGCAGCCGc-----CGCG- -5'
12443 3' -60.6 NC_003324.1 + 38824 0.68 0.346134
Target:  5'- cGUGCGGGuCCAUggcguaUUCGUCGGCGucccaccagcucGCGa -3'
miRNA:   3'- cUACGCCC-GGUA------GAGCAGCCGC------------CGCg -5'
12443 3' -60.6 NC_003324.1 + 5716 0.68 0.338212
Target:  5'- --cGCGGGCgCAaccgaaaccUC-CGUUGGCGGCa- -3'
miRNA:   3'- cuaCGCCCG-GU---------AGaGCAGCCGCCGcg -5'
12443 3' -60.6 NC_003324.1 + 23417 0.68 0.322766
Target:  5'- --cGuuGGCCg---CGUCGGUGGCGCc -3'
miRNA:   3'- cuaCgcCCGGuagaGCAGCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 51095 0.69 0.315243
Target:  5'- ---uUGGGCCAUUUCGUCGGCcuuCGUc -3'
miRNA:   3'- cuacGCCCGGUAGAGCAGCCGcc-GCG- -5'
12443 3' -60.6 NC_003324.1 + 2623 0.69 0.315243
Target:  5'- cGUGCcgucuGCCGUCcgucgccuguUCGUCGGUGGCGUc -3'
miRNA:   3'- cUACGcc---CGGUAG----------AGCAGCCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.