miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12443 3' -60.6 NC_003324.1 + 21946 1.03 0.000984
Target:  5'- gGAUGCGGGCC-UCUCGUCGGCGGCGCg -3'
miRNA:   3'- -CUACGCCCGGuAGAGCAGCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 18595 0.89 0.011279
Target:  5'- --gGCGGGCCAUCUgGUgGGCGGCGUg -3'
miRNA:   3'- cuaCGCCCGGUAGAgCAgCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 4617 0.81 0.041684
Target:  5'- --gGCGcGGCuCAUCUUGUCGGUGGCGUc -3'
miRNA:   3'- cuaCGC-CCG-GUAGAGCAGCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 41635 0.77 0.07918
Target:  5'- -uUGCcacGGCuCGcccgcUCUCGUCGGCGGCGCg -3'
miRNA:   3'- cuACGc--CCG-GU-----AGAGCAGCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 28639 0.74 0.143835
Target:  5'- -uUGCGGGCCGcCUUGUCGcgcgucGUGGUGCc -3'
miRNA:   3'- cuACGCCCGGUaGAGCAGC------CGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 31757 0.71 0.212618
Target:  5'- gGAUGC-GGCCgAUCUCGgauggaaCGGCGGCa- -3'
miRNA:   3'- -CUACGcCCGG-UAGAGCa------GCCGCCGcg -5'
12443 3' -60.6 NC_003324.1 + 49885 0.71 0.223681
Target:  5'- --gGCGGGCaaagAUCgcugCGUCGGC-GCGCu -3'
miRNA:   3'- cuaCGCCCGg---UAGa---GCAGCCGcCGCG- -5'
12443 3' -60.6 NC_003324.1 + 13174 0.7 0.253487
Target:  5'- --aGCGaGGCUg---CGUCGGCGGCGg -3'
miRNA:   3'- cuaCGC-CCGGuagaGCAGCCGCCGCg -5'
12443 3' -60.6 NC_003324.1 + 13699 0.69 0.279621
Target:  5'- gGAUGCuGGGUaaguGUCgCGUCGGaCGGCGg -3'
miRNA:   3'- -CUACG-CCCGg---UAGaGCAGCC-GCCGCg -5'
12443 3' -60.6 NC_003324.1 + 8409 0.69 0.293472
Target:  5'- uGAUGCGGGUCAgggauuUC-CGcCGGCugcaGGUGCa -3'
miRNA:   3'- -CUACGCCCGGU------AGaGCaGCCG----CCGCG- -5'
12443 3' -60.6 NC_003324.1 + 24062 0.69 0.296306
Target:  5'- --gGCGGGCUuuaccuUCUCGcCGGUgcgcugcgccacgguGGCGCu -3'
miRNA:   3'- cuaCGCCCGGu-----AGAGCaGCCG---------------CCGCG- -5'
12443 3' -60.6 NC_003324.1 + 1406 0.69 0.307853
Target:  5'- cGGUGCuGGGCguUCuucgccUCGUCGaGCaGCGCg -3'
miRNA:   3'- -CUACG-CCCGguAG------AGCAGC-CGcCGCG- -5'
12443 3' -60.6 NC_003324.1 + 50096 0.69 0.307853
Target:  5'- --aGCGGccccagcgcuuGCCgAUCUUGUgGGCGGCGa -3'
miRNA:   3'- cuaCGCC-----------CGG-UAGAGCAgCCGCCGCg -5'
12443 3' -60.6 NC_003324.1 + 51095 0.69 0.315243
Target:  5'- ---uUGGGCCAUUUCGUCGGCcuuCGUc -3'
miRNA:   3'- cuacGCCCGGUAGAGCAGCCGcc-GCG- -5'
12443 3' -60.6 NC_003324.1 + 2623 0.69 0.315243
Target:  5'- cGUGCcgucuGCCGUCcgucgccuguUCGUCGGUGGCGUc -3'
miRNA:   3'- cUACGcc---CGGUAG----------AGCAGCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 23417 0.68 0.322766
Target:  5'- --cGuuGGCCg---CGUCGGUGGCGCc -3'
miRNA:   3'- cuaCgcCCGGuagaGCAGCCGCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 5716 0.68 0.338212
Target:  5'- --cGCGGGCgCAaccgaaaccUC-CGUUGGCGGCa- -3'
miRNA:   3'- cuaCGCCCG-GU---------AGaGCAGCCGCCGcg -5'
12443 3' -60.6 NC_003324.1 + 17988 0.68 0.346134
Target:  5'- aGAUcGUGGGCCGUgUCGaucgcuUCGGauaccgauuggcCGGCGCc -3'
miRNA:   3'- -CUA-CGCCCGGUAgAGC------AGCC------------GCCGCG- -5'
12443 3' -60.6 NC_003324.1 + 14971 0.68 0.346134
Target:  5'- --gGCGGG-CAUCaCGUCGGCaccuauGCGCa -3'
miRNA:   3'- cuaCGCCCgGUAGaGCAGCCGc-----CGCG- -5'
12443 3' -60.6 NC_003324.1 + 38824 0.68 0.346134
Target:  5'- cGUGCGGGuCCAUggcguaUUCGUCGGCGucccaccagcucGCGa -3'
miRNA:   3'- cUACGCCC-GGUA------GAGCAGCCGC------------CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.