miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12443 5' -57.2 NC_003324.1 + 3377 0.68 0.470035
Target:  5'- cGGcAGCCuGGUGUAGUC-CCAUuuCCCg -3'
miRNA:   3'- aCC-UCGG-CCGUAUCAGcGGUAucGGG- -5'
12443 5' -57.2 NC_003324.1 + 16061 0.68 0.470035
Target:  5'- aUGGcaucGCCGcGCAUcuuaucGUCGCCAacGCCCa -3'
miRNA:   3'- -ACCu---CGGC-CGUAu-----CAGCGGUauCGGG- -5'
12443 5' -57.2 NC_003324.1 + 47198 0.68 0.470035
Target:  5'- aGGGGgUGGUGcAGUCGCCAgacuuGCCg -3'
miRNA:   3'- aCCUCgGCCGUaUCAGCGGUau---CGGg -5'
12443 5' -57.2 NC_003324.1 + 27632 0.68 0.470035
Target:  5'- cGuGAGCCGGCA-----GCCG-AGCCCg -3'
miRNA:   3'- aC-CUCGGCCGUaucagCGGUaUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 18900 0.68 0.467049
Target:  5'- aUGGAGaCUGGCGccgaccuucgccgCGCCAUGGaCCCg -3'
miRNA:   3'- -ACCUC-GGCCGUauca---------GCGGUAUC-GGG- -5'
12443 5' -57.2 NC_003324.1 + 54264 0.69 0.421615
Target:  5'- aUGGA-CCGGCAUcAG-CGCCG-AGCCg -3'
miRNA:   3'- -ACCUcGGCCGUA-UCaGCGGUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 34147 0.7 0.391353
Target:  5'- cGGAGCCgcuGGCAuUGGgCGCCGUGGguaucauucuacacCCCa -3'
miRNA:   3'- aCCUCGG---CCGU-AUCaGCGGUAUC--------------GGG- -5'
12443 5' -57.2 NC_003324.1 + 31165 0.7 0.385118
Target:  5'- cGGAGCugccCGGCcug--CGCCAUcaGGCCCg -3'
miRNA:   3'- aCCUCG----GCCGuaucaGCGGUA--UCGGG- -5'
12443 5' -57.2 NC_003324.1 + 38356 0.7 0.376325
Target:  5'- cGGGG-CGGCGcUGGUCGCCGUcGUgCg -3'
miRNA:   3'- aCCUCgGCCGU-AUCAGCGGUAuCGgG- -5'
12443 5' -57.2 NC_003324.1 + 43245 0.7 0.350772
Target:  5'- gGGGGCCGccuGCAgGGUCGCC-UGGCa- -3'
miRNA:   3'- aCCUCGGC---CGUaUCAGCGGuAUCGgg -5'
12443 5' -57.2 NC_003324.1 + 30272 0.71 0.334434
Target:  5'- aUGcGGGCCaaGGCAcGGUCGCCcaAGCCg -3'
miRNA:   3'- -AC-CUCGG--CCGUaUCAGCGGuaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 16134 0.71 0.326476
Target:  5'- cGcGGCCGGCA-AGUCGUCGaacuUGGCCUc -3'
miRNA:   3'- aCcUCGGCCGUaUCAGCGGU----AUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 54825 0.72 0.30345
Target:  5'- gGuGAGaCCGGCAgggAGaUUGCCGcAGCCCu -3'
miRNA:   3'- aC-CUC-GGCCGUa--UC-AGCGGUaUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 1523 0.72 0.281694
Target:  5'- aGGAuCCGGCggcaGUGGUgcgcggCGCUAUGGCCCc -3'
miRNA:   3'- aCCUcGGCCG----UAUCA------GCGGUAUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 53702 0.72 0.281694
Target:  5'- uUGGAGCCGGCGacguucGUCGCgc-AGCUCg -3'
miRNA:   3'- -ACCUCGGCCGUau----CAGCGguaUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 14520 0.72 0.267889
Target:  5'- uUGGAcGCCGGCAUGGgC-CCAgAGCCg -3'
miRNA:   3'- -ACCU-CGGCCGUAUCaGcGGUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 21980 1.12 0.000363
Target:  5'- uUGGAGCCGGCAUAGUCGCCAUAGCCCg -3'
miRNA:   3'- -ACCUCGGCCGUAUCAGCGGUAUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.