miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12443 5' -57.2 NC_003324.1 + 27632 0.68 0.470035
Target:  5'- cGuGAGCCGGCA-----GCCG-AGCCCg -3'
miRNA:   3'- aC-CUCGGCCGUaucagCGGUaUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 47198 0.68 0.470035
Target:  5'- aGGGGgUGGUGcAGUCGCCAgacuuGCCg -3'
miRNA:   3'- aCCUCgGCCGUaUCAGCGGUau---CGGg -5'
12443 5' -57.2 NC_003324.1 + 18900 0.68 0.467049
Target:  5'- aUGGAGaCUGGCGccgaccuucgccgCGCCAUGGaCCCg -3'
miRNA:   3'- -ACCUC-GGCCGUauca---------GCGGUAUC-GGG- -5'
12443 5' -57.2 NC_003324.1 + 34147 0.7 0.391353
Target:  5'- cGGAGCCgcuGGCAuUGGgCGCCGUGGguaucauucuacacCCCa -3'
miRNA:   3'- aCCUCGG---CCGU-AUCaGCGGUAUC--------------GGG- -5'
12443 5' -57.2 NC_003324.1 + 16134 0.71 0.326476
Target:  5'- cGcGGCCGGCA-AGUCGUCGaacuUGGCCUc -3'
miRNA:   3'- aCcUCGGCCGUaUCAGCGGU----AUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 53702 0.72 0.281694
Target:  5'- uUGGAGCCGGCGacguucGUCGCgc-AGCUCg -3'
miRNA:   3'- -ACCUCGGCCGUau----CAGCGguaUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 36168 0.68 0.490185
Target:  5'- aGGAGCagGGCucacUCGCCAcAGCCg -3'
miRNA:   3'- aCCUCGg-CCGuaucAGCGGUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 36599 0.68 0.510728
Target:  5'- --cAGCCGGUcuccuAUGgcuGUCGCCGUcGCCCu -3'
miRNA:   3'- accUCGGCCG-----UAU---CAGCGGUAuCGGG- -5'
12443 5' -57.2 NC_003324.1 + 5545 0.67 0.552814
Target:  5'- gUGGGGCgGGCGacGcCGCCu--GCCUa -3'
miRNA:   3'- -ACCUCGgCCGUauCaGCGGuauCGGG- -5'
12443 5' -57.2 NC_003324.1 + 24405 0.67 0.562436
Target:  5'- aGGAccgcguuGCCGGCAUGGUgcgcguccgcgaCGCCuucGCCa -3'
miRNA:   3'- aCCU-------CGGCCGUAUCA------------GCGGuauCGGg -5'
12443 5' -57.2 NC_003324.1 + 27228 0.67 0.563507
Target:  5'- aGGaAGUgGGCGgccaacGUCGCCAacgGGCUCa -3'
miRNA:   3'- aCC-UCGgCCGUau----CAGCGGUa--UCGGG- -5'
12443 5' -57.2 NC_003324.1 + 4978 0.66 0.59588
Target:  5'- cGGAGCCGaaaGCGauaaCGCCAgccugacGGCCCa -3'
miRNA:   3'- aCCUCGGC---CGUaucaGCGGUa------UCGGG- -5'
12443 5' -57.2 NC_003324.1 + 56640 0.66 0.606743
Target:  5'- aUGGGcGgCGGCAUgGGUCGCgGgcaacuucGCCCg -3'
miRNA:   3'- -ACCU-CgGCCGUA-UCAGCGgUau------CGGG- -5'
12443 5' -57.2 NC_003324.1 + 43013 0.66 0.615448
Target:  5'- gGGAcgagaccGCCGGCGcagugaccgccaaUGGUCGCCcc-GCCg -3'
miRNA:   3'- aCCU-------CGGCCGU-------------AUCAGCGGuauCGGg -5'
12443 5' -57.2 NC_003324.1 + 28992 0.66 0.617626
Target:  5'- aGGAGCCGGaaucGGUCGCagcgaaggaCGaGGCCg -3'
miRNA:   3'- aCCUCGGCCgua-UCAGCG---------GUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 41705 0.66 0.628523
Target:  5'- gGcGAGCCguGGCaAUGGUgGgCGUGGCUCu -3'
miRNA:   3'- aC-CUCGG--CCG-UAUCAgCgGUAUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 14520 0.72 0.267889
Target:  5'- uUGGAcGCCGGCAUGGgC-CCAgAGCCg -3'
miRNA:   3'- -ACCU-CGGCCGUAUCaGcGGUaUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.