miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12443 5' -57.2 NC_003324.1 + 1523 0.72 0.281694
Target:  5'- aGGAuCCGGCggcaGUGGUgcgcggCGCUAUGGCCCc -3'
miRNA:   3'- aCCUcGGCCG----UAUCA------GCGGUAUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 54825 0.72 0.30345
Target:  5'- gGuGAGaCCGGCAgggAGaUUGCCGcAGCCCu -3'
miRNA:   3'- aC-CUC-GGCCGUa--UC-AGCGGUaUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 30272 0.71 0.334434
Target:  5'- aUGcGGGCCaaGGCAcGGUCGCCcaAGCCg -3'
miRNA:   3'- -AC-CUCGG--CCGUaUCAGCGGuaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 43245 0.7 0.350772
Target:  5'- gGGGGCCGccuGCAgGGUCGCC-UGGCa- -3'
miRNA:   3'- aCCUCGGC---CGUaUCAGCGGuAUCGgg -5'
12443 5' -57.2 NC_003324.1 + 38356 0.7 0.376325
Target:  5'- cGGGG-CGGCGcUGGUCGCCGUcGUgCg -3'
miRNA:   3'- aCCUCgGCCGU-AUCAGCGGUAuCGgG- -5'
12443 5' -57.2 NC_003324.1 + 31165 0.7 0.385118
Target:  5'- cGGAGCugccCGGCcug--CGCCAUcaGGCCCg -3'
miRNA:   3'- aCCUCG----GCCGuaucaGCGGUA--UCGGG- -5'
12443 5' -57.2 NC_003324.1 + 54264 0.69 0.421615
Target:  5'- aUGGA-CCGGCAUcAG-CGCCG-AGCCg -3'
miRNA:   3'- -ACCUcGGCCGUA-UCaGCGGUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 3377 0.68 0.470035
Target:  5'- cGGcAGCCuGGUGUAGUC-CCAUuuCCCg -3'
miRNA:   3'- aCC-UCGG-CCGUAUCAGcGGUAucGGG- -5'
12443 5' -57.2 NC_003324.1 + 4845 0.68 0.480059
Target:  5'- aUGGcGCCGGCAacaacGUUgcgGCCGgucgAGCCCu -3'
miRNA:   3'- -ACCuCGGCCGUau---CAG---CGGUa---UCGGG- -5'
12443 5' -57.2 NC_003324.1 + 16557 0.68 0.484097
Target:  5'- aGGGGCUGGCugcucaucgucUCGCCGUAGUUg -3'
miRNA:   3'- aCCUCGGCCGuauc-------AGCGGUAUCGGg -5'
12443 5' -57.2 NC_003324.1 + 42578 0.68 0.510728
Target:  5'- -cGuGCCGGCAgccUCGCUGUAGgCCg -3'
miRNA:   3'- acCuCGGCCGUaucAGCGGUAUCgGG- -5'
12443 5' -57.2 NC_003324.1 + 42104 0.68 0.51488
Target:  5'- aGGGGCCGGgAgcgcuucgcacucGUCGCCAauGCCg -3'
miRNA:   3'- aCCUCGGCCgUau-----------CAGCGGUauCGGg -5'
12443 5' -57.2 NC_003324.1 + 14472 0.67 0.552814
Target:  5'- cGGAccuuGCUGGCAccGUCGCgGaAGCCg -3'
miRNA:   3'- aCCU----CGGCCGUauCAGCGgUaUCGGg -5'
12443 5' -57.2 NC_003324.1 + 20408 0.67 0.5678
Target:  5'- cGGAGCCGuCAUcGUCGaucgcaagcagguacUCAUGGCCg -3'
miRNA:   3'- aCCUCGGCcGUAuCAGC---------------GGUAUCGGg -5'
12443 5' -57.2 NC_003324.1 + 53025 0.66 0.589377
Target:  5'- cUGaGAGCUGGCAcaaggacaaagcccuUGGUCGCCcgGuUCCu -3'
miRNA:   3'- -AC-CUCGGCCGU---------------AUCAGCGGuaUcGGG- -5'
12443 5' -57.2 NC_003324.1 + 11088 0.66 0.59588
Target:  5'- cGGuGCCaacuugaacGGCAacaccuacaaUGGccugCGCUAUGGCCCg -3'
miRNA:   3'- aCCuCGG---------CCGU----------AUCa---GCGGUAUCGGG- -5'
12443 5' -57.2 NC_003324.1 + 21980 1.12 0.000363
Target:  5'- uUGGAGCCGGCAUAGUCGCCAUAGCCCg -3'
miRNA:   3'- -ACCUCGGCCGUAUCAGCGGUAUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.